Non-Coding RNA Search

Ss1.1-Pig4-TMW8004D03.3

Sequence:


               
               AGGAACAAAGAGCTGACGCAGAAGATCCAGAGGGCCTCCGAGAGTGAGGAAGAGGAGGGA
GGCGCCGAGGAAGAGGGTGAACCCCTTGTCCCGGACGTGGTGAACGAGGTGCAGGTGAAG
GTGAACGGACCAAACCCCTGGATGTTCAGGAATCACTCCAGTGATGCAAGAGAGGCCGAG
GTCCAGGAGGGCCCTGAAGAAGGTGCAGAGCCTGCGGGCCATGAGGCTTCTGAAAGCGAG
GAAGAAGGGCCAGGGGCAGAGGAAGACATGCTGTTGAAGGAATTCGAAGAAAGGCGATCG
CTTAGACAAAAGTCTGGACTCAACGGGCCTGTGGGCAGCCCAGAAACAAAAGATTCCAGC
AGCCAGGAGGTGCTATCCGAATTGAGGGCACTGGCCCAGAGACTCAACAAGGAGAACCAT
CGGTCCGGGAGGCAAGAAGTGAGTGCAGCGAGGAAGGGGACAGTCCTGCAGGTCCAGAGA
GAGGAGCCTGCCGAGGAGGAAGAGGAGCCCTTGTTGCTGCAGAGGCCAGAGAGAGCACAG
ACTCTGGACGAGCTGGAGGAGCTGGGCAGAGAAGGGTGTTTACAAAATGAGGAGCTTCCC
CGAGCTGCGGTAGAAGGGCAGCAGTTGGAGACGAACCCAAATAATCATCTTGGTGCTACC
CCCAAGGAGAAGAAAAGGAAGGAGCAAATGATAGATCTCCAGAACCTCCTAACCACAAAG
TCTCCTTCCGTGAAGTCCTTGGCAGTTCCCACGACAGTAGAGGAGTTGGAAGATGAAGAA
GAGAGAGATCAAAGGCAGATGATAAAGGAAGCTTTTGCTGGGGATGATGTCATCAGAGAC
TTCTTGAAAGAGAAGCGCGAAGCTGTGGAGGCGAGTAAGCCAAAGGACGTGGACCTGACT
CTGCCTGGCTGGGGCGAGTGGGGTGGTGTGGGCCTGAAGCCCAGTGCCAAGAAGAGACGC
CGGTTTCTCATTAAAACCCCTGAGGGTCCGCCAAGAAAAGACAAGAATTTGCCAAATGTG
ATTATCAGTGAGCAGCGGAACATCCATGCGGCAGCTCATCAGGTACGGGTGCTTCCATAT
CCATTCACACACCATCAGCAATTTGAAAGGACCATCCAGACCCCTATAGGATCTACATGG
AACACCCAGAGGGCCTTCCAGAAGCTGACTATGCCCAAGGTTGTCACCAAGCCAGGCCAT
ATCATTAAGCCTATAAAAGCAGAGGATGTGGGCTACCGGTCTTCCTCAAGGTCGGACCTC
TCTGTCGTACAGAGGAATCCAAAACGACTTTCCATCCGTCACAAAAAACAGCTGAAGCAA
AACTCTGTACATTGATTGCTTGAATAATCACACCTCGGTGCCCGGAACCAGGAGCCCCGA
CTGCTCCTCCACTGGCCCGGTTTTACTCCGAGCTGCAGGATCAGTTCCAAAACTGGCTTA
GCACACCATGAGTGTAAAGCCACATTTTAGAAATAAAGGCATTTTTAATCTAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACAAAGAGCTGACGCAGAAGATCCAGAGGGCCTCCGAGAGTGAGGAAGAGGAGGGA
GGCGCCGAGGAAGAGGGTGAACCCCTTGTCCCGGACGTGGTGAACGAGGTGCAGGTGAAG
GTGAACGGACCAAACCCCTGGATGTTCAGGAATCACTCCAGTGATGCAAGAGAGGCCGAG
GTCCAGGAGGGCCCTGAAGAAGGTGCAGAGCCTGCGGGCCATGAGGCTTCTGAAAGCGAG
GAAGAAGGGCCAGGGGCAGAGGAAGACATGCTGTTGAAGGAATTCGAAGAAAGGCGATCG
CTTAGACAAAAGTCTGGACTCAACGGGCCTGTGGGCAGCCCAGAAACAAAAGATTCCAGC
AGCCAGGAGGTGCTATCCGAATTGAGGGCACTGGCCCAGAGACTCAACAAGGAGAACCAT
CGGTCCGGGAGGCAAGAAGTGAGTGCAGCGAGGAAGGGGACAGTCCTGCAGGTCCAGAGA
GAGGAGCCTGCCGAGGAGGAAGAGGAGCCCTTGTTGCTGCAGAGGCCAGAGAGAGCACAG
ACTCTGGACGAGCTGGAGGAGCTGGGCAGAGAAGGGTGTTTACAAAATGAGGAGCTTCCC
CGAGCTGCGGTAGAAGGGCAGCAGTTGGAGACGAACCCAAATAATCATCTTGGTGCTACC
CCCAAGGAGAAGAAAAGGAAGGAGCAAATGATAGATCTCCAGAACCTCCTAACCACAAAG
TCTCCTTCCGTGAAGTCCTTGGCAGTTCCCACGACAGTAGAGGAGTTGGAAGATGAAGAA
GAGAGAGATCAAAGGCAGATGATAAAGGAAGCTTTTGCTGGGGATGATGTCATCAGAGAC
TTCTTGAAAGAGAAGCGCGAAGCTGTGGAGGCGAGTAAGCCAAAGGACGTGGACCTGACT
CTGCCTGGCTGGGGCGAGTGGGGTGGTGTGGGCCTGAAGCCCAGTGCCAAGAAGAGACGC
CGGTTTCTCATTAAAACCCCTGAGGGTCCGCCAAGAAAAGACAAGAATTTGCCAAATGTG
ATTATCAGTGAGCAGCGGAACATCCATGCGGCAGCTCATCAGGTACGGGTGCTTCCATAT
CCATTCACACACCATCAGCAATTTGAAAGGACCATCCAGACCCCTATAGGATCTACATGG
AACACCCAGAGGGCCTTCCAGAAGCTGACTATGCCCAAGGTTGTCACCAAGCCAGGCCAT
ATCATTAAGCCTATAAAAGCAGAGGATGTGGGCTACCGGTCTTCCTCAAGGTCGGACCTC
TCTGTCGTACAGAGGAATCCAAAACGACTTTCCATCCGTCACAAAAAACAGCTGAAGCAA
AACTCTGTACATTGATTGCTTGAATAATCACACCTCGGTGCCCGGAACCAGGAGCCCCGA
CTGCTCCTCCACTGGCCCGGTTTTACTCCGAGCTGCAGGATCAGTTCCAAAACTGGCTTA
GCACACCATGAGTGTAAAGCCACATTTTAGAAATAAAGGCATTTTTAATCTAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835424|ref|XP_588524.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835424|ref|XP_588524.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.956888
               

               
               430-1493, - strand, RNAz p=0.930135
               

               
               1060-1218, - strand, RNAz p=0.909013

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.956888
               

               
               430-1493, - strand, RNAz p=0.930135
               

               
               1060-1218, - strand, RNAz p=0.909013

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-323, gnl|bosTau2|chr22 (7324046-7324368)
               

               
               1-323, gnl|Hg17|chrX (128780735-128781060)
               

               
               1-323, gnl|Mm7|chrX (43367083-43367402)
               


               
               351-769, gnl|bosTau2|chr22 (7326182-7326582)
               

               
               351-769, gnl|Hg17|chrX (128784304-128784707)
               

               
               351-769, gnl|Mm7|chrX (43369472-43369872)
               


               
               1060-1493, gnl|bosTau2|chr22 (7329274-7329709)
               

               
               1060-1493, gnl|Hg17|chrX (128788844-128789268)
               

               
               1060-1493, gnl|Mm7|chrX (43374311-43374705)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-323, gnl|bosTau2|chr22 (7324046-7324368)
               

               
               1-323, gnl|Hg17|chrX (128780735-128781060)
               

               
               1-323, gnl|Mm7|chrX (43367083-43367402)
               


               
               351-769, gnl|bosTau2|chr22 (7326182-7326582)
               

               
               351-769, gnl|Hg17|chrX (128784304-128784707)
               

               
               351-769, gnl|Mm7|chrX (43369472-43369872)
               


               
               1060-1493, gnl|bosTau2|chr22 (7329274-7329709)
               

               
               1060-1493, gnl|Hg17|chrX (128788844-128789268)
               

               
               1060-1493, gnl|Mm7|chrX (43374311-43374705)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               amn (0.417711)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-119, - strand, RNAz p=0.956888
	430-1493, - strand, RNAz p=0.930135
	1060-1218, - strand, RNAz p=0.909013

	1-323, gnl\|bosTau2\|chr22 (7324046-7324368)
	1-323, gnl\|Hg17\|chrX (128780735-128781060)
	1-323, gnl\|Mm7\|chrX (43367083-43367402)

	351-769, gnl\|bosTau2\|chr22 (7326182-7326582)
	351-769, gnl\|Hg17\|chrX (128784304-128784707)
	351-769, gnl\|Mm7\|chrX (43369472-43369872)

	1060-1493, gnl\|bosTau2\|chr22 (7329274-7329709)
	1060-1493, gnl\|Hg17\|chrX (128788844-128789268)
	1060-1493, gnl\|Mm7\|chrX (43374311-43374705)

	amn (0.417711)
	med (0.232504)
	nms (0.213858)
	duo (0.172801)
	tbr (0.154178)
	pla (0.133672)
	cly (0.120642)
	clu (0.119646)
	cty (0.10408)
	jej (0.0989218)