Non-Coding RNA Search

Ss1.1-Pig4-TMW8004E13.5

Sequence:


               
               GACCCAAGCTCCTTACTTTGACGTTCAAGACACTTGACTATTCGACCCCAAACTACCCTT
GCAGCCTTACCTCCTGCTGCTCTTTATTGAACCTCACCACTCCCCAGATACTGGATGGAC
CCTTTCCCAGCTTCATGAGAGGAGAGACGGCAAGTGACATAATATAAAGATCTCCCCCCC
CAAAAAAAGTCACAAGTCAGTGAGTTTACACAGAGACCTTCACACAGTCTCCTTTGCCTT
AAAAATTCTGTGCCGTCTTGCCTGGCATAGGACACCTCATTGGAGATGCTGCTCCCACCT
TCCTCTGGCATTATAGTCCATGCTTCATCTCAGGAGCTGGGATTCCTTTTGTTCATGATT
CCTTAAGTTATTTTTCATGTATATGTTTTGCTCACTCCTCAAGGGCAGCAGCTGTGCCTG
GTCTTTTCTCCCTAGTCTATGACATAGTTCCTGGCACATAGTTGTTGAACAGCTGATCTC
AGCGTGTGCTTCTTCAGTGCAGTTAAAGTAGTTAATCCAGATGTATGTGCCGCACAGTGC
ACTGGACTGGGATTCAGAGACCTATGTCTCAGGTCCAAGTGTGCCACTAGATATGTGACC
TTGGGTAAGTCACTCAGTCTCCTTTATTAAACAAGGGGGTTGGACTAAATGATCTCTAAG
ACCCCTTCAACTTTCATGATTCCGACCCCATTTCTTGGATCAAGAAATACATTTCCTACT
CTGTAATGTTCAGCAGCCTCAACTTAACCAGTCAACCATCCATATTCCTCAAATAGTTTT
CAGACTCTTAGAAACAGTTTTCTGGATCTAGCCAAAGCTGCCCGATTAGGCTCCTGTTGG
CTTATCCAGTGACCACTGAGCTGTTGCAACACTTCCTCAGAAGTTTTTCTGTGCCTATTA
CACCATCATACTGCTCCATGGCCTCCGTCCCAGGAGGGAGCCCTTCTTTGTGTTGGCCTA
AGGGACAACAGCAAGGAAGCAGAGGGAGAGGAGGTTTTGTCATTTTTCTTCCCTTTAACT
CCCACCAACATTACAACTGCTGCCGTGTGGGTTCTTTTTATTGACATGTTTTCAGGGGGT
GATGCCTATTTCTGTGAGAAATAAGTTTTAAGCAACTCATATGCCTCTTTCAAGGGTACA
TTGCTTTTTGAGGTGGGAGGACTAGGGTTAGCAACTCAACAGGTACTTTCACCATAATCT
CCATGTAATAAATAAGAGCCTATGAAAAGATTAAATCTTTCTTAATGCTTTGTGATTGGC
TTAATCAATAATTAATCATCTTTAGATAAGGCTGTAACTTGTGGAGTAGATATAATTGGA
TTAGCTGAAAAGAGGCAGTTGGGGAGCTTTGAAGAGATTAAAATGGCTGTGATCCCATAA
TTAAACTGCCACAAACAAAAGCAATGGTGTCCGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCAAGCTCCTTACTTTGACGTTCAAGACACTTGACTATTCGACCCCAAACTACCCTT
GCAGCCTTACCTCCTGCTGCTCTTTATTGAACCTCACCACTCCCCAGATACTGGATGGAC
CCTTTCCCAGCTTCATGAGAGGAGAGACGGCAAGTGACATAATATAAAGATCTCCCCCCC
CAAAAAAAGTCACAAGTCAGTGAGTTTACACAGAGACCTTCACACAGTCTCCTTTGCCTT
AAAAATTCTGTGCCGTCTTGCCTGGCATAGGACACCTCATTGGAGATGCTGCTCCCACCT
TCCTCTGGCATTATAGTCCATGCTTCATCTCAGGAGCTGGGATTCCTTTTGTTCATGATT
CCTTAAGTTATTTTTCATGTATATGTTTTGCTCACTCCTCAAGGGCAGCAGCTGTGCCTG
GTCTTTTCTCCCTAGTCTATGACATAGTTCCTGGCACATAGTTGTTGAACAGCTGATCTC
AGCGTGTGCTTCTTCAGTGCAGTTAAAGTAGTTAATCCAGATGTATGTGCCGCACAGTGC
ACTGGACTGGGATTCAGAGACCTATGTCTCAGGTCCAAGTGTGCCACTAGATATGTGACC
TTGGGTAAGTCACTCAGTCTCCTTTATTAAACAAGGGGGTTGGACTAAATGATCTCTAAG
ACCCCTTCAACTTTCATGATTCCGACCCCATTTCTTGGATCAAGAAATACATTTCCTACT
CTGTAATGTTCAGCAGCCTCAACTTAACCAGTCAACCATCCATATTCCTCAAATAGTTTT
CAGACTCTTAGAAACAGTTTTCTGGATCTAGCCAAAGCTGCCCGATTAGGCTCCTGTTGG
CTTATCCAGTGACCACTGAGCTGTTGCAACACTTCCTCAGAAGTTTTTCTGTGCCTATTA
CACCATCATACTGCTCCATGGCCTCCGTCCCAGGAGGGAGCCCTTCTTTGTGTTGGCCTA
AGGGACAACAGCAAGGAAGCAGAGGGAGAGGAGGTTTTGTCATTTTTCTTCCCTTTAACT
CCCACCAACATTACAACTGCTGCCGTGTGGGTTCTTTTTATTGACATGTTTTCAGGGGGT
GATGCCTATTTCTGTGAGAAATAAGTTTTAAGCAACTCATATGCCTCTTTCAAGGGTACA
TTGCTTTTTGAGGTGGGAGGACTAGGGTTAGCAACTCAACAGGTACTTTCACCATAATCT
CCATGTAATAAATAAGAGCCTATGAAAAGATTAAATCTTTCTTAATGCTTTGTGATTGGC
TTAATCAATAATTAATCATCTTTAGATAAGGCTGTAACTTGTGGAGTAGATATAATTGGA
TTAGCTGAAAAGAGGCAGTTGGGGAGCTTTGAAGAGATTAAAATGGCTGTGATCCCATAA
TTAAACTGCCACAAACAAAAGCAATGGTGTCCGAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               188-341, + strand, RNAz p=0.999999
               

               
               502-659, - strand, RNAz p=0.986113
               

               
               881-1037, - strand, RNAz p=0.981299

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-341, + strand, RNAz p=0.999999
               

               
               502-659, - strand, RNAz p=0.986113
               

               
               881-1037, - strand, RNAz p=0.981299

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1017-1156, - strand, RNAmicro p=0.999033

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1017-1156, - strand, RNAmicro p=0.999033

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1410, gnl|bosTau2|chr5 (40943950-40942544)
               

               
               1-1410, gnl|Hg17|chr12 (105780071-105781546)
               

               
               1-1410, gnl|Mm7|chr10 (84554683-84555922)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1410, gnl|bosTau2|chr5 (40943950-40942544)
               

               
               1-1410, gnl|Hg17|chr12 (105780071-105781546)
               

               
               1-1410, gnl|Mm7|chr10 (84554683-84555922)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	188-341, + strand, RNAz p=0.999999
	502-659, - strand, RNAz p=0.986113
	881-1037, - strand, RNAz p=0.981299

	1-1410, gnl\|bosTau2\|chr5 (40943950-40942544)
	1-1410, gnl\|Hg17\|chr12 (105780071-105781546)
	1-1410, gnl\|Mm7\|chr10 (84554683-84555922)