Ss1.1-Pig4-TMW8004H13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGTTTGCCCGTCAGTCGAGTCCGGAGTGAGGAGCTCGGGCGCCGGAGCGGAGGGAGACT CTTGAGCTTAAGCTTGCCGCCGCCACGGCCACCGCCTGGACCTTTGCCCGGAGGGAGCCG CAGAGGGTCTGTCGCCGCCGTCCTCTGGAGGGCAGCGCAACTGGGGGCCCGGACCTCCAG TCCGGGAGGGATTTTTCGTCGTCCCCCCTCCCCCCAGCGAGGGAGCCCGAGCGGCCGCCA AACAAAGGTACCAGTCGCCGCCGCGGGAGGAGGAGGAGCCGGAGCTTCAGCCTCAGCAAC CGCTGGACCCGCCGCCCTTCTTCCCCCATCTCTCCCCCGGGCCTGCTGGTTTTGGGGGGG AGCAGGGAAGGGGACTCTGGACGTGCCAGGGTCAGAGCTCGCCTCCGAGGAAGGTGTAGG TGAATCTGGTGTTTTCGAGGGGATCGCGGCCCCAGAGTCATCATGAAGGCCCTTGATGAA CCTCCCTATTTGACAGTGGGCACTGATGTGAGTGCTAAATACAGAGGAGCCTTTTGTGAA GCCAAGATCAAGACGGCAAAACGACTAGTCAAAGTCAAGGTAACATTTAGGCATGATTCT TCAACAGTGGAAGTTCAGGATGACCACATTAAGGGTCCACTAAAGGTTGGAGCTCTTGTG GAAGTGAAGAATCTTGATGGTGCCTATCAGGAAGCTGTAATCAATAAATTAACAGATGCA AGTTGGTATACTGTAGTTTTTGACGATGGAGATGAAAAGACACTGAGACGCTCTTCACTG TGCCTGAAAGGGGAGAGGCATTTTGCTGAAAGTGAAACATTAGACCAGCTCCCACTCACC AACCCTGAACATTTTGGCACTCCAGTCATAGGAAAGAAAACAAATAGAGGAAGAAGATCT AATCATATACCAGAGGAAGAGTCTTCTTCATCCTCCAGTGATGAAGATGAGGATGATAGG AAACAGATTGATGAGCTGCTAGGAAAAGTTGTCTGTGTAGATTATGTTAGTTTGGATAAA AAGAAAGCACTATGGTTTCCTGCATTGGTGGTTTGTCCTGATTGTAGTGATGAAATTGCT GTGAAAAAAGACAATATTCTTGTTCGATCTTTTAAAGATGGCAAATTTACTTCAGTACCA AGAAAGGATGTTCATGAAATTACTAGTGACACTGCACCAAAGCCTGATGCTGTATTAAAA CAAGCCTTTGATCAGGCACTTGAATTTCACAAAAGTAGAACTATTCCTGCTAACTGGAAG ACTGAATTGAAAGAAGATAGTTCTAGCAGTGAAGCAGAGGAAGAAGAGGAAGAGGAAGAT GATGAAAAAGAAAAGGAGGATAACAGCAGTGAAGAAGAGGAAGAAATAGAACCATTTCCA GAGGAAAGGGAGAACTTTCTTCAGCAGTTGTACAAATTTATGGAAGATAGAGGGACACCT ATTAACAAACGACCAGTACTTGGATATCGAAATTTGAATCTCTTTAAGTTATTCAGACTT GTACACAAACTTGGAGGATTTGATAATATTGAAAGTGGAGCTGTTTGGAAACAAGTCTAC CAAGATCTTGGAATCCCTGTCTTAAATTCAGCTGCAGGATACAATGTTAAATGTGCTTAT AAAAAATACTTATATGGTTTTGAGGAGTACTGTAGGTCGGCCAATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGTTTGCCCGTCAGTCGAGTCCGGAGTGAGGAGCTCGGGCGCCGGAGCGGAGGGAGACT CTTGAGCTTAAGCTTGCCGCCGCCACGGCCACCGCCTGGACCTTTGCCCGGAGGGAGCCG CAGAGGGTCTGTCGCCGCCGTCCTCTGGAGGGCAGCGCAACTGGGGGCCCGGACCTCCAG TCCGGGAGGGATTTTTCGTCGTCCCCCCTCCCCCCAGCGAGGGAGCCCGAGCGGCCGCCA AACAAAGGTACCAGTCGCCGCCGCGGGAGGAGGAGGAGCCGGAGCTTCAGCCTCAGCAAC CGCTGGACCCGCCGCCCTTCTTCCCCCATCTCTCCCCCGGGCCTGCTGGTTTTGGGGGGG AGCAGGGAAGGGGACTCTGGACGTGCCAGGGTCAGAGCTCGCCTCCGAGGAAGGTGTAGG TGAATCTGGTGTTTTCGAGGGGATCGCGGCCCCAGAGTCATCATGAAGGCCCTTGATGAA CCTCCCTATTTGACAGTGGGCACTGATGTGAGTGCTAAATACAGAGGAGCCTTTTGTGAA GCCAAGATCAAGACGGCAAAACGACTAGTCAAAGTCAAGGTAACATTTAGGCATGATTCT TCAACAGTGGAAGTTCAGGATGACCACATTAAGGGTCCACTAAAGGTTGGAGCTCTTGTG GAAGTGAAGAATCTTGATGGTGCCTATCAGGAAGCTGTAATCAATAAATTAACAGATGCA AGTTGGTATACTGTAGTTTTTGACGATGGAGATGAAAAGACACTGAGACGCTCTTCACTG TGCCTGAAAGGGGAGAGGCATTTTGCTGAAAGTGAAACATTAGACCAGCTCCCACTCACC AACCCTGAACATTTTGGCACTCCAGTCATAGGAAAGAAAACAAATAGAGGAAGAAGATCT AATCATATACCAGAGGAAGAGTCTTCTTCATCCTCCAGTGATGAAGATGAGGATGATAGG AAACAGATTGATGAGCTGCTAGGAAAAGTTGTCTGTGTAGATTATGTTAGTTTGGATAAA AAGAAAGCACTATGGTTTCCTGCATTGGTGGTTTGTCCTGATTGTAGTGATGAAATTGCT GTGAAAAAAGACAATATTCTTGTTCGATCTTTTAAAGATGGCAAATTTACTTCAGTACCA AGAAAGGATGTTCATGAAATTACTAGTGACACTGCACCAAAGCCTGATGCTGTATTAAAA CAAGCCTTTGATCAGGCACTTGAATTTCACAAAAGTAGAACTATTCCTGCTAACTGGAAG ACTGAATTGAAAGAAGATAGTTCTAGCAGTGAAGCAGAGGAAGAAGAGGAAGAGGAAGAT GATGAAAAAGAAAAGGAGGATAACAGCAGTGAAGAAGAGGAAGAAATAGAACCATTTCCA GAGGAAAGGGAGAACTTTCTTCAGCAGTTGTACAAATTTATGGAAGATAGAGGGACACCT ATTAACAAACGACCAGTACTTGGATATCGAAATTTGAATCTCTTTAAGTTATTCAGACTT GTACACAAACTTGGAGGATTTGATAATATTGAAAGTGGAGCTGTTTGGAAACAAGTCTAC CAAGATCTTGGAATCCCTGTCTTAAATTCAGCTGCAGGATACAATGTTAAATGTGCTTAT AAAAAATACTTATATGGTTTTGAGGAGTACTGTAGGTCGGCCAATATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 118-229, - strand, RNAz p=0.715522 | |
| 305-415, + strand, RNAz p=0.62137 | |
| 467-1321, + strand, RNAz p=0.968672 | |
| 906-1024, + strand, RNAz p=0.965238 | |
| 933-1048, - strand, RNAz p=0.542357 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 118-229, - strand, RNAz p=0.715522 | |
| 305-415, + strand, RNAz p=0.62137 | |
| 467-1321, + strand, RNAz p=0.968672 | |
| 906-1024, + strand, RNAz p=0.965238 | |
| 933-1048, - strand, RNAz p=0.542357 |
| Homologous human UTR: 4 entry(ies) | More info |
| Homologous human UTR: 4 entry(ies) | Help | Less info |
| 3' of AK057552, - | |
| 3' of AK057552, + | |
| 3' of AF214114, + | |
| 3' of AB030181, + |
| Homologous human UTR: 4 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK057552, - | |
| 3' of AK057552, + | |
| 3' of AF214114, + | |
| 3' of AB030181, + |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-415, gnl|bosTau2|chr28 (2161270-2161685) | |
| 1-415, gnl|canFam2|chr4 (7600733-7600178) | |
| 1-415, gnl|echTel1|scaffold_218946 (6506-7090) | |
| 1-415, gnl|hg17|chr1 (231817041-231817585) | |
| 1-415, gnl|Hg17|chr1 (231817537-231817123) | |
| 1-415, gnl|mm7|chr13 (13430152-13429639) | |
| 1-415, gnl|Mm7|chr13 (13429682-13430095) | |
| 1-415, gnl|monDom2|scaffold_13 (50436097-50435568) | |
| 1-415, gnl|oryCun1|scaffold_172622 (35113-35658) | |
| 1-415, gnl|panTro1|chr1 (215640368-215640914) | |
| 1-415, gnl|rheMac2|chr1 (221681357-221680808) | |
| 1-415, gnl|rn3|chr17 (59468487-59468991) | |
| 467-582, gnl|bosTau2|chr28 (2214834-2214949) | |
| 467-582, gnl|canFam2|chr4 (7661320-7661172) | |
| 467-582, gnl|danRer3|chr17 (8520053-8519906) | |
| 467-582, gnl|dasNov1|scaffold_3190 (36653-36508) | |
| 467-582, gnl|echTel1|scaffold_320429 (6882-6738) | |
| 467-582, gnl|fr1|chrUn (93226511-93226658) | |
| 467-582, gnl|hg17|chr1 (231749986-231750134) | |
| 467-582, gnl|Hg17|chr1 (231750110-231749995) | |
| 467-582, gnl|loxAfr1|scaffold_200052 (1099-952) | |
| 467-582, gnl|mm7|chr13 (13486108-13485960) | |
| 467-582, gnl|Mm7|chr13 (13485982-13486097) | |
| 467-582, gnl|monDom2|scaffold_13 (50534860-50534718) | |
| 467-582, gnl|panTro1|chr1 (215575208-215575356) | |
| 467-582, gnl|rheMac2|chr7 (121317538-121317399) | |
| 467-582, gnl|rn3|chr17 (59426598-59426746) | |
| 467-582, gnl|tetNig1|chr17 (1992744-1992601) | |
| 467-582, gnl|xenTro1|scaffold_371 (929141-928997) | |
| 906-1050, gnl|bosTau2|chr28 (2239553-2239697) | |
| 906-1050, gnl|canFam2|chr4 (7684143-7683977) | |
| 906-1050, gnl|danRer3|chrNA (199687033-199687195) | |
| 906-1050, gnl|dasNov1|scaffold_3190 (64017-63850) | |
| 906-1050, gnl|echTel1|scaffold_98831 (4690-4521) | |
| 906-1050, gnl|galGal2|chrUn (11634894-11634728) | |
| 906-1050, gnl|hg17|chr1 (231729656-231729823) | |
| 906-1050, gnl|Hg17|chr1 (231729810-231729666) | |
| 906-1050, gnl|loxAfr1|scaffold_7150 (69822-69989) | |
| 906-1050, gnl|mm7|chr13 (13508976-13508809) | |
| 906-1050, gnl|Mm7|chr13 (13508820-13508964) | |
| 906-1050, gnl|monDom2|scaffold_13 (50557235-50557068) | |
| 906-1050, gnl|oryCun1|scaffold_215350 (39771-39938) | |
| 906-1050, gnl|panTro1|chr1 (215554656-215554823) | |
| 906-1050, gnl|rheMac2|chr1 (221768891-221768724) | |
| 906-1050, gnl|rn3|chr17 (59399913-59400080) | |
| 906-1050, gnl|tetNig1|chr17 (1997431-1997273) | |
| 906-1050, gnl|xenTro1|scaffold_371 (937525-937362) | |
| 1203-1360, gnl|bosTau2|chr28 (2246987-2247144) | |
| 1203-1360, gnl|Hg17|chr1 (231718743-231718586) | |
| 1203-1360, gnl|Mm7|chr13 (13520826-13520983) | |
| 1528-1628, gnl|bosTau2|chr28 (2252975-2253075) | |
| 1528-1628, gnl|canFam2|chr4 (7701557-7701422) | |
| 1528-1628, gnl|danRer3|chrNA (199673333-199673464) | |
| 1528-1628, gnl|dasNov1|scaffold_3190 (78420-78273) | |
| 1528-1628, gnl|echTel1|scaffold_317094 (2940-3075) | |
| 1528-1628, gnl|fr1|chrUn (93222090-93222212) | |
| 1528-1628, gnl|galGal2|chrUn (11647890-11647756) | |
| 1528-1628, gnl|hg17|chr1 (231710909-231711044) | |
| 1528-1628, gnl|Hg17|chr1 (231711018-231710918) | |
| 1528-1628, gnl|loxAfr1|scaffold_7150 (53291-53425) | |
| 1528-1628, gnl|mm7|chr13 (13527228-13527093) | |
| 1528-1628, gnl|Mm7|chr13 (13527117-13527217) | |
| 1528-1628, gnl|monDom2|scaffold_13 (50580449-50580321) | |
| 1528-1628, gnl|oryCun1|scaffold_132512 (1898-1767) | |
| 1528-1628, gnl|panTro1|chr1 (215535939-215536074) | |
| 1528-1628, gnl|rheMac2|chr1 (221788840-221788705) | |
| 1528-1628, gnl|rn3|chr17 (59388257-59388392) | |
| 1528-1628, gnl|tetNig1|chr17 (2001106-2001002) | |
| 1528-1628, gnl|xenTro1|scaffold_371 (945196-945080) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-415, gnl|bosTau2|chr28 (2161270-2161685) | |
| 1-415, gnl|canFam2|chr4 (7600733-7600178) | |
| 1-415, gnl|echTel1|scaffold_218946 (6506-7090) | |
| 1-415, gnl|hg17|chr1 (231817041-231817585) | |
| 1-415, gnl|Hg17|chr1 (231817537-231817123) | |
| 1-415, gnl|mm7|chr13 (13430152-13429639) | |
| 1-415, gnl|Mm7|chr13 (13429682-13430095) | |
| 1-415, gnl|monDom2|scaffold_13 (50436097-50435568) | |
| 1-415, gnl|oryCun1|scaffold_172622 (35113-35658) | |
| 1-415, gnl|panTro1|chr1 (215640368-215640914) | |
| 1-415, gnl|rheMac2|chr1 (221681357-221680808) | |
| 1-415, gnl|rn3|chr17 (59468487-59468991) | |
| 467-582, gnl|bosTau2|chr28 (2214834-2214949) | |
| 467-582, gnl|canFam2|chr4 (7661320-7661172) | |
| 467-582, gnl|danRer3|chr17 (8520053-8519906) | |
| 467-582, gnl|dasNov1|scaffold_3190 (36653-36508) | |
| 467-582, gnl|echTel1|scaffold_320429 (6882-6738) | |
| 467-582, gnl|fr1|chrUn (93226511-93226658) | |
| 467-582, gnl|hg17|chr1 (231749986-231750134) | |
| 467-582, gnl|Hg17|chr1 (231750110-231749995) | |
| 467-582, gnl|loxAfr1|scaffold_200052 (1099-952) | |
| 467-582, gnl|mm7|chr13 (13486108-13485960) | |
| 467-582, gnl|Mm7|chr13 (13485982-13486097) | |
| 467-582, gnl|monDom2|scaffold_13 (50534860-50534718) | |
| 467-582, gnl|panTro1|chr1 (215575208-215575356) | |
| 467-582, gnl|rheMac2|chr7 (121317538-121317399) | |
| 467-582, gnl|rn3|chr17 (59426598-59426746) | |
| 467-582, gnl|tetNig1|chr17 (1992744-1992601) | |
| 467-582, gnl|xenTro1|scaffold_371 (929141-928997) | |
| 906-1050, gnl|bosTau2|chr28 (2239553-2239697) | |
| 906-1050, gnl|canFam2|chr4 (7684143-7683977) | |
| 906-1050, gnl|danRer3|chrNA (199687033-199687195) | |
| 906-1050, gnl|dasNov1|scaffold_3190 (64017-63850) | |
| 906-1050, gnl|echTel1|scaffold_98831 (4690-4521) | |
| 906-1050, gnl|galGal2|chrUn (11634894-11634728) | |
| 906-1050, gnl|hg17|chr1 (231729656-231729823) | |
| 906-1050, gnl|Hg17|chr1 (231729810-231729666) | |
| 906-1050, gnl|loxAfr1|scaffold_7150 (69822-69989) | |
| 906-1050, gnl|mm7|chr13 (13508976-13508809) | |
| 906-1050, gnl|Mm7|chr13 (13508820-13508964) | |
| 906-1050, gnl|monDom2|scaffold_13 (50557235-50557068) | |
| 906-1050, gnl|oryCun1|scaffold_215350 (39771-39938) | |
| 906-1050, gnl|panTro1|chr1 (215554656-215554823) | |
| 906-1050, gnl|rheMac2|chr1 (221768891-221768724) | |
| 906-1050, gnl|rn3|chr17 (59399913-59400080) | |
| 906-1050, gnl|tetNig1|chr17 (1997431-1997273) | |
| 906-1050, gnl|xenTro1|scaffold_371 (937525-937362) | |
| 1203-1360, gnl|bosTau2|chr28 (2246987-2247144) | |
| 1203-1360, gnl|Hg17|chr1 (231718743-231718586) | |
| 1203-1360, gnl|Mm7|chr13 (13520826-13520983) | |
| 1528-1628, gnl|bosTau2|chr28 (2252975-2253075) | |
| 1528-1628, gnl|canFam2|chr4 (7701557-7701422) | |
| 1528-1628, gnl|danRer3|chrNA (199673333-199673464) | |
| 1528-1628, gnl|dasNov1|scaffold_3190 (78420-78273) | |
| 1528-1628, gnl|echTel1|scaffold_317094 (2940-3075) | |
| 1528-1628, gnl|fr1|chrUn (93222090-93222212) | |
| 1528-1628, gnl|galGal2|chrUn (11647890-11647756) | |
| 1528-1628, gnl|hg17|chr1 (231710909-231711044) | |
| 1528-1628, gnl|Hg17|chr1 (231711018-231710918) | |
| 1528-1628, gnl|loxAfr1|scaffold_7150 (53291-53425) | |
| 1528-1628, gnl|mm7|chr13 (13527228-13527093) | |
| 1528-1628, gnl|Mm7|chr13 (13527117-13527217) | |
| 1528-1628, gnl|monDom2|scaffold_13 (50580449-50580321) | |
| 1528-1628, gnl|oryCun1|scaffold_132512 (1898-1767) | |
| 1528-1628, gnl|panTro1|chr1 (215535939-215536074) | |
| 1528-1628, gnl|rheMac2|chr1 (221788840-221788705) | |
| 1528-1628, gnl|rn3|chr17 (59388257-59388392) | |
| 1528-1628, gnl|tetNig1|chr17 (2001106-2001002) | |
| 1528-1628, gnl|xenTro1|scaffold_371 (945196-945080) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) | |
| jca (0.11396) |