Non-Coding RNA Search

Ss1.1-Pig4-TMW8004I08.5

Sequence:


               
               CAAACTCTTCACCAAGCTTCATTAGACTTGGATTCCTTAGCAGAGAGTCCCGAATCGGAT
TTTATGTCTGCTGTGAATGAGTTTGTAATAGAAGAAAATCTATCATCTCCCAATCCTATC
AGTGATCCTCAAAGTCCAGAAATGATGGTGGAGTCTCTTTACTCATCAGTCATCAATGCG
ATAGACAGCAGGCGGATGCAGGATACAAATACGTGTGGTCAGGAGGACGCGGGCGGCCGG
GCGTCTCTCAGCGTCCAGCTGGAGAAGTGCCGAGTCACTGCCCACGACTCGCACCTCAGT
ATACAAACCATCAAGGAGGACCTTTGCCACTTCCGCACATTTGTACAGAAAGAACAGGGT
GATTTCTCAAATTCGTTAAAGTGTACAGCAGTTGAAATAAGAAACATTATTGAAAAGGTA
AAACATTCTTTGGAAATAACACTAAATGAAAACCATCAAAGAGAGCTACAGTCTTTAAAA
AGTGACTATGAAGGCAGACTTGCTGCCCTGGTAAAGGAGAGTGAAGAAAGTGAAAACAGA
ATCACACAGCTGAAAGGAGACTTAGCATGCCTTGAGGAGGTTTTACAAAATAAAGATAAC
GAATTCGCTTTGGTTAAACACGAGAAAGAAGTGGTGGTCGGCCTGCAGAATGAGAAGGAT
CAGAAGCTGCTGGCGATGGAAGGGCTCCTGCGCACGCAGCATGGTGAGATCGAGGGGCTG
AAGCAGTCCCGGGAGATGGCGCTGGAGGACTTAGAGAGACTGCGCGAGGAGCATGAGGCC
AGGATGCAGCTGCTGAGGGCGGAGCTCCAGCGCTCGGAGCAGAGCCACCTGAAGGAGCTG
GAGGACACGCTGCAGGCCAGGCACACTCAGGAGCTGGAGAGGTCCCTGGCCGACCACAGG
GTGTGCCTTGAGAAGCTGGAGAAGGAGAACCAGCAGAGACTGGAGCAGGTGCAAAACTCT
CATGCTGCAGTCATCCAGGAGAGAGAACAGCAGCTTCAGGAGTTAAAACTCAAGGTTTCT
GATTTGTCGGACATGAGGTGTAAGTTAGAGGTTGAGCTTGCCTTGAAGGAAGCAGAAACT
GACGAAATAAAACTATTGCTGGAGGAAAGCAGAGCCCAACAGAAGGAGACCCTGAAATCT
CTCCTTGAACAAGAGACAGAATACTTGAGATCAGAGATAAGTAAACTAAACCAGAAGATT
CAAGATCATAATGAACATTATCAGGTGGGCTTGGCAGAGCTGAGAACTTTGATGACAATT
GAAAAGGATGAGTGCATTTCAGAGTTAATCACTAGGCACGAAGGGGAATCTACTATGCTG
AGAGCAGAATTGAGCAAAGTGACGTCATTGCATCACCATGCATTGGAAATAGAAAAAAGC
CTGAGAGAAGAGTTAGCTGAACTGCAGAGGAAGTTGGACTCAGAACTGAGTGCTCTTGAA
AAACAAAAAGATGAGAAAATCATCCAACAAGAGGAGAAGTACGAAGCTATCATCCAGAAG
CTTGAGAAAGACAAAGAGGAGTTTGTCATTCGACAGGAACAGGATAGAGAACTGCTAATT
CAGAAGCTTAATTGCGAAAAGGCAAAAGCAGCAGACATTGAGGCTGCCCTGAAAGAATTT
AACTTGGAAAGAGAAGCTGTTGAGAAAGAGTTATTAGAAAGAGTTAAACATCTTGAGAGT
CAAATAGCAGAAAGTCATGCCATTGAATCTGCCAGAGAAGATTCTTCAAGCCTAGTTGCT
GAACTTCAAGAAAAGCTCCAGGAAGAAAAAGCTAAGTTTCTAGAACAGCTAGAAGAGCAA
GAGAAGAGGAAGAATGAAGAAATGCAGAATGTTCGAACATCTTTGATTGCTGAGCAACAG
ACCAACTTTAACACTGTTTTAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACTCTTCACCAAGCTTCATTAGACTTGGATTCCTTAGCAGAGAGTCCCGAATCGGAT
TTTATGTCTGCTGTGAATGAGTTTGTAATAGAAGAAAATCTATCATCTCCCAATCCTATC
AGTGATCCTCAAAGTCCAGAAATGATGGTGGAGTCTCTTTACTCATCAGTCATCAATGCG
ATAGACAGCAGGCGGATGCAGGATACAAATACGTGTGGTCAGGAGGACGCGGGCGGCCGG
GCGTCTCTCAGCGTCCAGCTGGAGAAGTGCCGAGTCACTGCCCACGACTCGCACCTCAGT
ATACAAACCATCAAGGAGGACCTTTGCCACTTCCGCACATTTGTACAGAAAGAACAGGGT
GATTTCTCAAATTCGTTAAAGTGTACAGCAGTTGAAATAAGAAACATTATTGAAAAGGTA
AAACATTCTTTGGAAATAACACTAAATGAAAACCATCAAAGAGAGCTACAGTCTTTAAAA
AGTGACTATGAAGGCAGACTTGCTGCCCTGGTAAAGGAGAGTGAAGAAAGTGAAAACAGA
ATCACACAGCTGAAAGGAGACTTAGCATGCCTTGAGGAGGTTTTACAAAATAAAGATAAC
GAATTCGCTTTGGTTAAACACGAGAAAGAAGTGGTGGTCGGCCTGCAGAATGAGAAGGAT
CAGAAGCTGCTGGCGATGGAAGGGCTCCTGCGCACGCAGCATGGTGAGATCGAGGGGCTG
AAGCAGTCCCGGGAGATGGCGCTGGAGGACTTAGAGAGACTGCGCGAGGAGCATGAGGCC
AGGATGCAGCTGCTGAGGGCGGAGCTCCAGCGCTCGGAGCAGAGCCACCTGAAGGAGCTG
GAGGACACGCTGCAGGCCAGGCACACTCAGGAGCTGGAGAGGTCCCTGGCCGACCACAGG
GTGTGCCTTGAGAAGCTGGAGAAGGAGAACCAGCAGAGACTGGAGCAGGTGCAAAACTCT
CATGCTGCAGTCATCCAGGAGAGAGAACAGCAGCTTCAGGAGTTAAAACTCAAGGTTTCT
GATTTGTCGGACATGAGGTGTAAGTTAGAGGTTGAGCTTGCCTTGAAGGAAGCAGAAACT
GACGAAATAAAACTATTGCTGGAGGAAAGCAGAGCCCAACAGAAGGAGACCCTGAAATCT
CTCCTTGAACAAGAGACAGAATACTTGAGATCAGAGATAAGTAAACTAAACCAGAAGATT
CAAGATCATAATGAACATTATCAGGTGGGCTTGGCAGAGCTGAGAACTTTGATGACAATT
GAAAAGGATGAGTGCATTTCAGAGTTAATCACTAGGCACGAAGGGGAATCTACTATGCTG
AGAGCAGAATTGAGCAAAGTGACGTCATTGCATCACCATGCATTGGAAATAGAAAAAAGC
CTGAGAGAAGAGTTAGCTGAACTGCAGAGGAAGTTGGACTCAGAACTGAGTGCTCTTGAA
AAACAAAAAGATGAGAAAATCATCCAACAAGAGGAGAAGTACGAAGCTATCATCCAGAAG
CTTGAGAAAGACAAAGAGGAGTTTGTCATTCGACAGGAACAGGATAGAGAACTGCTAATT
CAGAAGCTTAATTGCGAAAAGGCAAAAGCAGCAGACATTGAGGCTGCCCTGAAAGAATTT
AACTTGGAAAGAGAAGCTGTTGAGAAAGAGTTATTAGAAAGAGTTAAACATCTTGAGAGT
CAAATAGCAGAAAGTCATGCCATTGAATCTGCCAGAGAAGATTCTTCAAGCCTAGTTGCT
GAACTTCAAGAAAAGCTCCAGGAAGAAAAAGCTAAGTTTCTAGAACAGCTAGAAGAGCAA
GAGAAGAGGAAGAATGAAGAAATGCAGAATGTTCGAACATCTTTGATTGCTGAGCAACAG
ACCAACTTTAACACTGTTTTAACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2137325|pir||I48282

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2137325|pir||I48282

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.883642
               

               
               1000-1119, + strand, RNAz p=0.626501

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.883642
               

               
               1000-1119, + strand, RNAz p=0.626501

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1694, gnl|bosTau2|chr14 (10776539-10778226)
               

               
               1-1694, gnl|Hg17|chr8 (53732808-53731121)
               

               
               1-1694, gnl|Mm7|chr1 (6249455-6251133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1694, gnl|bosTau2|chr14 (10776539-10778226)
               

               
               1-1694, gnl|Hg17|chr8 (53732808-53731121)
               

               
               1-1694, gnl|Mm7|chr1 (6249455-6251133)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               vin (0.332557)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	1-119, - strand, RNAz p=0.883642
	1000-1119, + strand, RNAz p=0.626501

	1-1694, gnl\|bosTau2\|chr14 (10776539-10778226)
	1-1694, gnl\|Hg17\|chr8 (53732808-53731121)
	1-1694, gnl\|Mm7\|chr1 (6249455-6251133)

	vin (0.332557)
	mga (0.32041)
	tbr (0.308356)
	sme (0.305437)
	isp (0.150376)
	nca (0.136874)
	lyg (0.133103)
	sug (0.127291)
	thg (0.126791)
	eru (0.120048)
	spc (0.113366)