Non-Coding RNA Search

Ss1.1-Pig4-TMW8004I18.3

Sequence:


               
               GTCAGGAAAGTTCTCAAGTGGATGTGGTCAATGTCGAGTGAGGGTTTTCATCTAAGGACT
AGTTATAAAAAGAAAATCAAATCATCTAAACTAGATGGACTTCTTGAAAGGAGAATCAAA
CAGTTTACACTGGAAGAAAAACAACGCCACGACAAAATGAAGTTGGAGGGTGGAATTAAG
GGTGTGGGGAAGACTTCTCCGAGTTCTTTGAGAAATCTGTCTGAGTTACCAGTACTAACA
AAAGCAAAAGAAGGGTGTCAGAGTGACTTGCTCAGACAAGAGCAGAGCTCTAAGGCAAGT
AATGATAAATCCGATGACTTGATTCGGGGATGTTCACAAAGTGATTCCTCAGTTCTTAGG
ATCAGTGATGCTGATCACACAGCAAACAAACTCTATCCAAAAGATCAAATGTTAGGTGAC
GTTTCCATTCAGAGCACAGAGACAAACGGTCAGAAACCACATTCTGCTCGAAGTGACGTA
GATGAGAGTCTCTCTGAACCTGCCAGGAAAGACCAGGAACCTAGTAAGAGTAAGCCAAAA
GGAAGTGATTTTCTCCTTAATGACTCTAAATTAGCCAGTGCAGATGAAATTGGTACTTTG
ATCTATAAGAACAAAAAACCACTCACACAGGAGGATAATGACAGCCTTGTTTCTCCTTCC
CAGAGCCCTTTACTTCCATCGGTACCTAAGAGTACTGATGACAGAGATACCCCATCTCTG
TCAAAAGCAATAGACTTTGAAGGAAAGCTGGGATGTGACTCTGAATATAATAGCACTTTG
GAAAATAGTTCTGATACTATGTCTATTCAAGACAGCAGTGAAGAAGATATGATTGTTCAG
AACAGCAATGAAAGTATTTCTGAACAGTTAATAACTCAAGAACAAGGTGTGGAAGGCTTG
GAACCATTGAAACGTGACTTTGGTTCAGATAAGTCCACTGGAAACTATGACAGCAGGCTG
CAGGGCAGGGTAAATGAAGCAAATGGTAAAAAACCAAGTCAAGATCAGAAATTAGAGGAG
AGACCAGCTAATAAATGTATTGATCAGACAAATCTGAAAAGTGTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGGAAAGTTCTCAAGTGGATGTGGTCAATGTCGAGTGAGGGTTTTCATCTAAGGACT
AGTTATAAAAAGAAAATCAAATCATCTAAACTAGATGGACTTCTTGAAAGGAGAATCAAA
CAGTTTACACTGGAAGAAAAACAACGCCACGACAAAATGAAGTTGGAGGGTGGAATTAAG
GGTGTGGGGAAGACTTCTCCGAGTTCTTTGAGAAATCTGTCTGAGTTACCAGTACTAACA
AAAGCAAAAGAAGGGTGTCAGAGTGACTTGCTCAGACAAGAGCAGAGCTCTAAGGCAAGT
AATGATAAATCCGATGACTTGATTCGGGGATGTTCACAAAGTGATTCCTCAGTTCTTAGG
ATCAGTGATGCTGATCACACAGCAAACAAACTCTATCCAAAAGATCAAATGTTAGGTGAC
GTTTCCATTCAGAGCACAGAGACAAACGGTCAGAAACCACATTCTGCTCGAAGTGACGTA
GATGAGAGTCTCTCTGAACCTGCCAGGAAAGACCAGGAACCTAGTAAGAGTAAGCCAAAA
GGAAGTGATTTTCTCCTTAATGACTCTAAATTAGCCAGTGCAGATGAAATTGGTACTTTG
ATCTATAAGAACAAAAAACCACTCACACAGGAGGATAATGACAGCCTTGTTTCTCCTTCC
CAGAGCCCTTTACTTCCATCGGTACCTAAGAGTACTGATGACAGAGATACCCCATCTCTG
TCAAAAGCAATAGACTTTGAAGGAAAGCTGGGATGTGACTCTGAATATAATAGCACTTTG
GAAAATAGTTCTGATACTATGTCTATTCAAGACAGCAGTGAAGAAGATATGATTGTTCAG
AACAGCAATGAAAGTATTTCTGAACAGTTAATAACTCAAGAACAAGGTGTGGAAGGCTTG
GAACCATTGAAACGTGACTTTGGTTCAGATAAGTCCACTGGAAACTATGACAGCAGGCTG
CAGGGCAGGGTAAATGAAGCAAATGGTAAAAAACCAAGTCAAGATCAGAAATTAGAGGAG
AGACCAGCTAATAAATGTATTGATCAGACAAATCTGAAAAGTGTCACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               640-759, - strand, RNAz p=0.967245

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               640-759, - strand, RNAz p=0.967245

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               661-763, + strand, RNAmicro p=0.986132

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               661-763, + strand, RNAmicro p=0.986132

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1068, gnl|bosTau2|chr19 (42993172-42992106)
               

               
               1-1068, gnl|Hg17|chr17 (63337551-63338617)
               

               
               1-1068, gnl|Mm7|chr11 (107183935-107182869)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1068, gnl|bosTau2|chr19 (42993172-42992106)
               

               
               1-1068, gnl|Hg17|chr17 (63337551-63338617)
               

               
               1-1068, gnl|Mm7|chr11 (107183935-107182869)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ski (0.146735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	1-1068, gnl\|bosTau2\|chr19 (42993172-42992106)
	1-1068, gnl\|Hg17\|chr17 (63337551-63338617)
	1-1068, gnl\|Mm7\|chr11 (107183935-107182869)