Non-Coding RNA Search

Ss1.1-Pig4-TMW8004J02.3

Sequence:


               
               GAGCCAGCGGTTAAATAGCTCACCAATCACAACTAGGCAGCTGGAATCTTTGATTCGTCT
AACAGAGGCACGAGCCAGGTTGGAATTAAGAGAGGAAGCAACCAAAGAAGATGCTGAGGA
CATAGTTGAAATTATGAAATATAGCATGCTAGGAACTTACTCTGATGAATTTGGGAACCT
AGATTTTGAACGATCTCAGCATGGTTCTGGAATGAGCAACAGGTCAACAGCAAAAAGGTT
TATTTCTGCTCTCAACAACATTGCTGAAAAAACTTACAATAATTTATTTCAATTTCAACA
ACTTCGGCAGATTGCCAAAGAGCTAAACATTCAGGTTGCTGATTTTGAAAATTTTATTGG
ATCGCTAAATGACCAAGGTTATCTCCTTAAAAAAGGCCCAAAGGTTTACCAGCTTCAAAC
TATGTAAAAGGATTACCAAGCCAGACCCTCCCGAGTTGCTTAAGAAGAATATGAAAAATA
CAAACAAAAAAAACAAAACTGTTCTCTGAAAAATTACATCACAAATGTAATATAATAAGA
AAAGAGTATTTAAGTGATAAAGTGTTAATTTTTTTATTTCTTCAAAAGGCTAAAAATAAA
TTGTTTATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCAGCGGTTAAATAGCTCACCAATCACAACTAGGCAGCTGGAATCTTTGATTCGTCT
AACAGAGGCACGAGCCAGGTTGGAATTAAGAGAGGAAGCAACCAAAGAAGATGCTGAGGA
CATAGTTGAAATTATGAAATATAGCATGCTAGGAACTTACTCTGATGAATTTGGGAACCT
AGATTTTGAACGATCTCAGCATGGTTCTGGAATGAGCAACAGGTCAACAGCAAAAAGGTT
TATTTCTGCTCTCAACAACATTGCTGAAAAAACTTACAATAATTTATTTCAATTTCAACA
ACTTCGGCAGATTGCCAAAGAGCTAAACATTCAGGTTGCTGATTTTGAAAATTTTATTGG
ATCGCTAAATGACCAAGGTTATCTCCTTAAAAAAGGCCCAAAGGTTTACCAGCTTCAAAC
TATGTAAAAGGATTACCAAGCCAGACCCTCCCGAGTTGCTTAAGAAGAATATGAAAAATA
CAAACAAAAAAAACAAAACTGTTCTCTGAAAAATTACATCACAAATGTAATATAATAAGA
AAAGAGTATTTAAGTGATAAAGTGTTAATTTTTTTATTTCTTCAAAAGGCTAAAAATAAA
TTGTTTATATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55651212|ref|XP_525258.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55651212|ref|XP_525258.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               143-336, gnl|bosTau2|chr13 (32916289-32916096)
               

               
               143-336, gnl|Hg17|chr20 (5922150-5922343)
               

               
               143-336, gnl|Mm7|chr2 (132583454-132583647)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-336, gnl|bosTau2|chr13 (32916289-32916096)
               

               
               143-336, gnl|Hg17|chr20 (5922150-5922343)
               

               
               143-336, gnl|Mm7|chr2 (132583454-132583647)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgm (0.180343)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	143-336, gnl\|bosTau2\|chr13 (32916289-32916096)
	143-336, gnl\|Hg17\|chr20 (5922150-5922343)
	143-336, gnl\|Mm7\|chr2 (132583454-132583647)