Ss1.1-Pig4-TMW8004J07.5.5
|
TGTCTATGTGAACATAATATTTAACTTGCAGGTGTTATTGGGTATCAGTCAGCACCAGAG
AATGATGGGTGTTAAGAGTGCCACATTTGAGCAAGTAAAAAGTAAAGCACATAGTGAGTG
AACATCCATCCAAGTAGTATGTGCATCATTTAGCTTGGACACAGAAAAGGAATATTTATA
TGGCTTCCCAAGTGCAAAATAACTTTTTATTTGTGTAATTTCTCCGAGTATTTATATTCC
ATCTCTTTTTCTCCTTTCTTAAAAGTGGATTTTCACTGTTGGCACATTATTTGAGTCTTA
AATATAAGGAACATAACACTTGCATTCTAATTTTTGCATATATTGTAAATGTGTCTGGTA
TTTACAGCAAAATACTGTGTATCCTTTTATGGGTAAAGCAGAATTGAACATTGCATGCAT
GTTATGTGGTGACTTTGTAATTTCGGGGTTCTTTGGGGCTTCTGTGACTTTAGAAATGCT
TACATTCAGGCCTTAATGTTGCATTAGGTAGCATGTTTTCCTTCTGATGTATATAGTCAC
TGTTGTATAAACTAATCTTTGCTTGTTTTCTACTTTGTGATCTTTCCATACTGTATTTCA
TTGATGATCAGTTAGTGTCAAGGAGTCAAATCAGATTACAATTAATTTTCATGTGTATAT
TGTGGAAAAAATGTGACTCGTGTGATTTTTGTTGTTGTTGTTTGTTTCCTTTAAGTACTA
TTGATCAGTTGTGACACTTTACTGGTTAAACTGACAGTGCTACACATTTCTCTGTAATAA
GCCACACATTATATTTAGGCAGTATAAAGGGACATTGGTTTTGTTCTCCTAGATAGCAGC
TGTCCCAAAGAAAATATTTCTTCTTTGCCTGTTAAGATTTAGCTGTTATCTGCCAGTTGT
TAAGTTTTGGTTCCAGATTCAACCAGCAGTGTTGAGAGCTGAACTTAAGATAGCTGTTGT
ACTTTTTGCTTTCCATCTGTTTCTGCCCTTCATTCTCAGCTCCCTACTATCTATAAACAG
CTGCTATGAAGGAGAAAAGTTGAATAAGAGTTGGCTTAAAAATTCTTTTAAAAGAAAAAT
TGAAGTTTTAGAATTTTCATTGTAACAAACTAATGCAAGCTGAGGCTGACAAGTTAAGAG
ACCAGAATATTGTTTGATCACATCTTGGATCCTTTCAAAAAAGTAAAGAATATATGAAGG
TAAATTAGTAGTATAAATATTAATACAAATATTATTTCTCTTATTTCTCTATTATATGTT
AAGTGACTTGACCTAATTATTTTATTTTTTTAAACATTTTCTCTCTTGTAATATGAATGC
TGATATTTAAAGATAGATCTATGTGGTTTTCTTTTGTGTTTCTTAATTGTTTATCTCTAC
GTGGACTAACTCTTAAGATTATTTGTGATCTGAATTTATATATATAAGCTGTTAAATATA
TGTAAACTGTTAAAATGGAATGCAAGTTTTTGAAAAAGCCCTGGTCTAAATGTAATGATT
GGTTTATTGTTCTACAACCGCAATTCATCATTTTTTGTGTAAATCATAAACAATAAACAG
GATGTACTCAGTGGTCATTTCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTCTATGTGAACATAATATTTAACTTGCAGGTGTTATTGGGTATCAGTCAGCACCAGAG
AATGATGGGTGTTAAGAGTGCCACATTTGAGCAAGTAAAAAGTAAAGCACATAGTGAGTG
AACATCCATCCAAGTAGTATGTGCATCATTTAGCTTGGACACAGAAAAGGAATATTTATA
TGGCTTCCCAAGTGCAAAATAACTTTTTATTTGTGTAATTTCTCCGAGTATTTATATTCC
ATCTCTTTTTCTCCTTTCTTAAAAGTGGATTTTCACTGTTGGCACATTATTTGAGTCTTA
AATATAAGGAACATAACACTTGCATTCTAATTTTTGCATATATTGTAAATGTGTCTGGTA
TTTACAGCAAAATACTGTGTATCCTTTTATGGGTAAAGCAGAATTGAACATTGCATGCAT
GTTATGTGGTGACTTTGTAATTTCGGGGTTCTTTGGGGCTTCTGTGACTTTAGAAATGCT
TACATTCAGGCCTTAATGTTGCATTAGGTAGCATGTTTTCCTTCTGATGTATATAGTCAC
TGTTGTATAAACTAATCTTTGCTTGTTTTCTACTTTGTGATCTTTCCATACTGTATTTCA
TTGATGATCAGTTAGTGTCAAGGAGTCAAATCAGATTACAATTAATTTTCATGTGTATAT
TGTGGAAAAAATGTGACTCGTGTGATTTTTGTTGTTGTTGTTTGTTTCCTTTAAGTACTA
TTGATCAGTTGTGACACTTTACTGGTTAAACTGACAGTGCTACACATTTCTCTGTAATAA
GCCACACATTATATTTAGGCAGTATAAAGGGACATTGGTTTTGTTCTCCTAGATAGCAGC
TGTCCCAAAGAAAATATTTCTTCTTTGCCTGTTAAGATTTAGCTGTTATCTGCCAGTTGT
TAAGTTTTGGTTCCAGATTCAACCAGCAGTGTTGAGAGCTGAACTTAAGATAGCTGTTGT
ACTTTTTGCTTTCCATCTGTTTCTGCCCTTCATTCTCAGCTCCCTACTATCTATAAACAG
CTGCTATGAAGGAGAAAAGTTGAATAAGAGTTGGCTTAAAAATTCTTTTAAAAGAAAAAT
TGAAGTTTTAGAATTTTCATTGTAACAAACTAATGCAAGCTGAGGCTGACAAGTTAAGAG
ACCAGAATATTGTTTGATCACATCTTGGATCCTTTCAAAAAAGTAAAGAATATATGAAGG
TAAATTAGTAGTATAAATATTAATACAAATATTATTTCTCTTATTTCTCTATTATATGTT
AAGTGACTTGACCTAATTATTTTATTTTTTTAAACATTTTCTCTCTTGTAATATGAATGC
TGATATTTAAAGATAGATCTATGTGGTTTTCTTTTGTGTTTCTTAATTGTTTATCTCTAC
GTGGACTAACTCTTAAGATTATTTGTGATCTGAATTTATATATATAAGCTGTTAAATATA
TGTAAACTGTTAAAATGGAATGCAAGTTTTTGAAAAAGCCCTGGTCTAAATGTAATGATT
GGTTTATTGTTCTACAACCGCAATTCATCATTTTTTGTGTAAATCATAAACAATAAACAG
GATGTACTCAGTGGTCATTTCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
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9-704, gnl|bosTau2|chr7 (68352044-68351357) |
|
9-704, gnl|Hg17|chr5 (108699846-108699171) |
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9-704, gnl|Mm7|chr17 (62493061-62492422) |
| |
|
1173-1586, gnl|bosTau2|chr7 (68351286-68350877) |
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1173-1586, gnl|canFam2|chr3 (5682589-5682114) |
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1173-1586, gnl|dasNov1|scaffold_14786 (35134-35614) |
|
1173-1586, gnl|echTel1|scaffold_280544 (34546-35039) |
|
1173-1586, gnl|hg17|chr5 (108698236-108698701) |
|
1173-1586, gnl|Hg17|chr5 (108698700-108698309) |
|
1173-1586, gnl|loxAfr1|scaffold_4398 (64368-63866) |
|
1173-1586, gnl|mm7|chr17 (62491506-62491989) |
|
1173-1586, gnl|Mm7|chr17 (62491989-62491578) |
|
1173-1586, gnl|oryCun1|scaffold_213733 (8365-8812) |
|
1173-1586, gnl|panTro1|chr4 (114776597-114777049) |
|
1173-1586, gnl|rheMac2|chr6 (105656616-105657082) |
|
1173-1586, gnl|rn3|chr9 (103212183-103212664) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
9-704, gnl|bosTau2|chr7 (68352044-68351357) |
|
9-704, gnl|Hg17|chr5 (108699846-108699171) |
|
9-704, gnl|Mm7|chr17 (62493061-62492422) |
| |
|
1173-1586, gnl|bosTau2|chr7 (68351286-68350877) |
|
1173-1586, gnl|canFam2|chr3 (5682589-5682114) |
|
1173-1586, gnl|dasNov1|scaffold_14786 (35134-35614) |
|
1173-1586, gnl|echTel1|scaffold_280544 (34546-35039) |
|
1173-1586, gnl|hg17|chr5 (108698236-108698701) |
|
1173-1586, gnl|Hg17|chr5 (108698700-108698309) |
|
1173-1586, gnl|loxAfr1|scaffold_4398 (64368-63866) |
|
1173-1586, gnl|mm7|chr17 (62491506-62491989) |
|
1173-1586, gnl|Mm7|chr17 (62491989-62491578) |
|
1173-1586, gnl|oryCun1|scaffold_213733 (8365-8812) |
|
1173-1586, gnl|panTro1|chr4 (114776597-114777049) |
|
1173-1586, gnl|rheMac2|chr6 (105656616-105657082) |
|
1173-1586, gnl|rn3|chr9 (103212183-103212664) |
|
fco (2.35812) |
|
pro (1.02407) |
|
mgp (0.922722) |
|
gul (0.710353) |
|
sag (0.548145) |
|
sme (0.305437) |
|
hyp (0.285673) |
|
kid (0.259471) |
|
ova (0.258264) |
|
ret (0.257467) |
|
sug (0.254582) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ese (0.126502) |
|
cty (0.10408) |
|
fco (2.35812) |
|
pro (1.02407) |
|
mgp (0.922722) |
|
gul (0.710353) |
|
sag (0.548145) |
|
sme (0.305437) |
|
hyp (0.285673) |
|
kid (0.259471) |
|
ova (0.258264) |
|
ret (0.257467) |
|
sug (0.254582) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
mgm (0.180343) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pty (0.142714) |
|
csk (0.140746) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ese (0.126502) |
|
cty (0.10408) |
