Non-Coding RNA Search

Ss1.1-Pig4-TMW8004K15.3

Sequence:


               
               GAGGTTGACCTGGTGATTCAGAGTTCACCTCCCCAGGATGTTGAGTCCTATATTCATCGC
TCTGGACGCACAGGTAGAGCTGGCCGGACAGGGATTTGCATATGTTTTTATCAACCAAGA
GAAAGAGGTCAACTAAGATATGTGGAACAAAAAGCAGGAATTACTTTTAAACGTGTAGGT
GTTCCTTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTCTGGCT
TCCGTTTCTTATGCTGCTGTTGATTTTTTCCGACCATCAGCTCAGAGACTGATAGAAGAG
AAAGGGGCAGTGGATGCATTGGCTGCAGCATTAGCTCACATCTCTGGCGCATCAAGTTTT
GAACCACGATCTTTGATCACTTCTGATAAGGGGTTTGTGACCATGACTCTGGAAAGCCCA
GAAGAAATTCAGGATGTCAGCTGTGCTTGGAAAGAACTTAACAAAAAGCTAAGCAGTAAT
GTCTTGTCCCAAATTACCAGAATGTGCCTCTTAAAAGGAAATATGGGTGTTTGTTTTGAT
GTTTCCACAGCTGAGTCAGAAAGGCTACAGGCAGAGTGGCATGATTCCGACTGGATACTC
TCAGTGCCAGCCAAGTTGCCTGAAATCGAAGAACATTATGATGGAAATACAGCTTCCAAT
TCCAGACAGAGGAGTGGCTGGTCAAGTGGCCGATCGGGCCGGTCTGGTCGGTCAGGTGGT
CGATCTGGTGGCCGGGCTGGTAGACAGAGTCGACAAGGGAGTCGGTCAGGATGTCGACAA
GATGGTAGAAGACGAAGTGGGAATAGAAATCGATCAAGAAGTGGGGGCCACAAACGGAGT
TTTGACTGAGATAGTTAATCTGTCAATGTGAGCTTGCCTGTTGCTGCCTAATCATGTACA
TTATCCACCTAAAAATTAGGTCATCATAGTTGAGGTATGTGTCTGCTACTTGCAAAGAAG
TTGGTCGTATTTTTTTAAAAGTATTTCACAAGAATGGTTGTAAACAAATCTACTTATCCA
GTTATAACTTTGAATAAAAAAACCTCCTTTTATTGTCTCTTTTCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTTGACCTGGTGATTCAGAGTTCACCTCCCCAGGATGTTGAGTCCTATATTCATCGC
TCTGGACGCACAGGTAGAGCTGGCCGGACAGGGATTTGCATATGTTTTTATCAACCAAGA
GAAAGAGGTCAACTAAGATATGTGGAACAAAAAGCAGGAATTACTTTTAAACGTGTAGGT
GTTCCTTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTCTGGCT
TCCGTTTCTTATGCTGCTGTTGATTTTTTCCGACCATCAGCTCAGAGACTGATAGAAGAG
AAAGGGGCAGTGGATGCATTGGCTGCAGCATTAGCTCACATCTCTGGCGCATCAAGTTTT
GAACCACGATCTTTGATCACTTCTGATAAGGGGTTTGTGACCATGACTCTGGAAAGCCCA
GAAGAAATTCAGGATGTCAGCTGTGCTTGGAAAGAACTTAACAAAAAGCTAAGCAGTAAT
GTCTTGTCCCAAATTACCAGAATGTGCCTCTTAAAAGGAAATATGGGTGTTTGTTTTGAT
GTTTCCACAGCTGAGTCAGAAAGGCTACAGGCAGAGTGGCATGATTCCGACTGGATACTC
TCAGTGCCAGCCAAGTTGCCTGAAATCGAAGAACATTATGATGGAAATACAGCTTCCAAT
TCCAGACAGAGGAGTGGCTGGTCAAGTGGCCGATCGGGCCGGTCTGGTCGGTCAGGTGGT
CGATCTGGTGGCCGGGCTGGTAGACAGAGTCGACAAGGGAGTCGGTCAGGATGTCGACAA
GATGGTAGAAGACGAAGTGGGAATAGAAATCGATCAAGAAGTGGGGGCCACAAACGGAGT
TTTGACTGAGATAGTTAATCTGTCAATGTGAGCTTGCCTGTTGCTGCCTAATCATGTACA
TTATCCACCTAAAAATTAGGTCATCATAGTTGAGGTATGTGTCTGCTACTTGCAAAGAAG
TTGGTCGTATTTTTTTAAAAGTATTTCACAAGAATGGTTGTAAACAAATCTACTTATCCA
GTTATAACTTTGAATAAAAAAACCTCCTTTTATTGTCTCTTTTCACTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5BJM0_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BJM0_RAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-587, gnl|bosTau2|chr11 (44869299-44868713)
               

               
               1-587, gnl|Hg17|chr10 (70401779-70412321)
               

               
               1-587, gnl|Mm7|chr10 (62107480-62101379)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-587, gnl|bosTau2|chr11 (44869299-44868713)
               

               
               1-587, gnl|Hg17|chr10 (70401779-70412321)
               

               
               1-587, gnl|Mm7|chr10 (62107480-62101379)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cte (0.87822)
               

               
               cbe (0.478469)
               

               
               aor (0.195274)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               cbe (0.478469)
               

               
               aor (0.195274)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	1-587, gnl\|bosTau2\|chr11 (44869299-44868713)
	1-587, gnl\|Hg17\|chr10 (70401779-70412321)
	1-587, gnl\|Mm7\|chr10 (62107480-62101379)

	cte (0.87822)
	cbe (0.478469)
	aor (0.195274)
	duo (0.172801)
	cje (0.165235)
	fco (0.157208)
	ski (0.146735)
	lnt (0.142308)
	cst (0.140036)
	lyg (0.133103)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	spc (0.113366)