Ss1.1-Pig4-TMW8004K17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACAAGCGCAGCCACAGCCAGTTCATAGCATAGACTCCCCTGGACTTAAAGCTGCCTCTC AACAGAAAGCAGAAGCCTCATCTCCGGGCCCTTACCTTTCGCCTGAGACAAACCCAGCAT CACCAGCCTCTGCTGTTAATCCTAATGTAAAATTAGGCAGTGTCAGACTGGAGGAGCCCA CCTCCGCTCCTCCCACCGCTGACCCCCTACATGCTGACTCTTTAAGAACACCAAGCCCTG AGGCAGCTCACACAGTGCCCAGAGACCAAGAGCCGTCCCTGTCGCCGCATGTAGACCCGG CCAAGGTGTATAGGAAGGACCCCTACCCCGAGGAAATGATGAGAGCCAACCATGTCTTGA AGCAGCCAGCTGTCACTCACCCAGGGCAGAGGCCAGACAGAGAGCCGGGTCTGAGCTATG AGCCCCAGCCCCCGTACATGGAGAGACAGGCCAGCAGAGACCTGGAGCAGCCTGCGTACA GATATGAGTCCTCCAGCTATACTGACCAGCTTTCTCGAAACTATGAACACCGTCTGCGCT GTGAAGACCACACTCCTGCATATGAGGAGAGGTGGTCCTACTATGATGACAGGCAGTCCT ACCAGCCTCGGCCTGCCCTGGACAGCCAGCACCCTCGAGACCTTGACCCTAGACAGCACC CTGAAGAGCCTTCAGAAACGAGGGCATTTCCCACGTTTCGAGGAGCCGACCCCACCGTCC TATGAAAGCAGGCCTCGCTATGACCAGCCACCCAGGACCTCTACCCTGCGGCTGGAAGAG CCATCCACTCCTGCCTATGATGCACATAGTAGGTACAGGCCTGAGGCTCAGCCCTATCCA TCTGCCAGCCTGAAGGTCGCAGAGCCTAAGCAGTATTTGGACCAGTATTCACGAAGTTAT GAGCAGGTCCCGTCCCAAGGACTTGGCTCTAAAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACAAGCGCAGCCACAGCCAGTTCATAGCATAGACTCCCCTGGACTTAAAGCTGCCTCTC AACAGAAAGCAGAAGCCTCATCTCCGGGCCCTTACCTTTCGCCTGAGACAAACCCAGCAT CACCAGCCTCTGCTGTTAATCCTAATGTAAAATTAGGCAGTGTCAGACTGGAGGAGCCCA CCTCCGCTCCTCCCACCGCTGACCCCCTACATGCTGACTCTTTAAGAACACCAAGCCCTG AGGCAGCTCACACAGTGCCCAGAGACCAAGAGCCGTCCCTGTCGCCGCATGTAGACCCGG CCAAGGTGTATAGGAAGGACCCCTACCCCGAGGAAATGATGAGAGCCAACCATGTCTTGA AGCAGCCAGCTGTCACTCACCCAGGGCAGAGGCCAGACAGAGAGCCGGGTCTGAGCTATG AGCCCCAGCCCCCGTACATGGAGAGACAGGCCAGCAGAGACCTGGAGCAGCCTGCGTACA GATATGAGTCCTCCAGCTATACTGACCAGCTTTCTCGAAACTATGAACACCGTCTGCGCT GTGAAGACCACACTCCTGCATATGAGGAGAGGTGGTCCTACTATGATGACAGGCAGTCCT ACCAGCCTCGGCCTGCCCTGGACAGCCAGCACCCTCGAGACCTTGACCCTAGACAGCACC CTGAAGAGCCTTCAGAAACGAGGGCATTTCCCACGTTTCGAGGAGCCGACCCCACCGTCC TATGAAAGCAGGCCTCGCTATGACCAGCCACCCAGGACCTCTACCCTGCGGCTGGAAGAG CCATCCACTCCTGCCTATGATGCACATAGTAGGTACAGGCCTGAGGCTCAGCCCTATCCA TCTGCCAGCCTGAAGGTCGCAGAGCCTAAGCAGTATTTGGACCAGTATTCACGAAGTTAT GAGCAGGTCCCGTCCCAAGGACTTGGCTCTAAAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 304-422, - strand, RNAz p=0.549134 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 304-422, - strand, RNAz p=0.549134 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 304-614, gnl|bosTau2|chr21 (11565-11875) | |
| 304-614, gnl|canFam2|chr3 (41870377-41870717) | |
| 304-614, gnl|danRer3|chrUn (80466368-80466089) | |
| 304-614, gnl|dasNov1|scaffold_41453 (3665-3331) | |
| 304-614, gnl|echTel1|scaffold_265723 (9397-9737) | |
| 304-614, gnl|fr1|chrUn (231065967-231065624) | |
| 304-614, gnl|galGal2|chr10 (6815292-6815644) | |
| 304-614, gnl|hg17|chr15 (27798222-27798562) | |
| 304-614, gnl|Hg17|chr15 (27798636-27798323) | |
| 304-614, gnl|loxAfr1|scaffold_5473 (21881-22221) | |
| 304-614, gnl|mm7|chr7 (61170982-61171319) | |
| 304-614, gnl|Mm7|chr7 (61171393-61171083) | |
| 304-614, gnl|monDom2|scaffold_12 (58176005-58176357) | |
| 304-614, gnl|oryCun1|scaffold_179611 (17151-17490) | |
| 304-614, gnl|panTro1|chr16 (19240844-19240504) | |
| 304-614, gnl|rheMac2|chr7 (8805566-8805906) | |
| 304-614, gnl|rn3|chr1 (119781183-119781520) | |
| 304-614, gnl|tetNig1|chr13 (12185487-12185156) | |
| 304-614, gnl|xenTro1|scaffold_676 (46248-46594) | |
| 654-920, gnl|bosTau2|chr21 (11885-12159) | |
| 654-920, gnl|Hg17|chr15 (27798286-27798021) | |
| 654-920, gnl|Mm7|chr7 (61171073-61170781) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 304-614, gnl|bosTau2|chr21 (11565-11875) | |
| 304-614, gnl|canFam2|chr3 (41870377-41870717) | |
| 304-614, gnl|danRer3|chrUn (80466368-80466089) | |
| 304-614, gnl|dasNov1|scaffold_41453 (3665-3331) | |
| 304-614, gnl|echTel1|scaffold_265723 (9397-9737) | |
| 304-614, gnl|fr1|chrUn (231065967-231065624) | |
| 304-614, gnl|galGal2|chr10 (6815292-6815644) | |
| 304-614, gnl|hg17|chr15 (27798222-27798562) | |
| 304-614, gnl|Hg17|chr15 (27798636-27798323) | |
| 304-614, gnl|loxAfr1|scaffold_5473 (21881-22221) | |
| 304-614, gnl|mm7|chr7 (61170982-61171319) | |
| 304-614, gnl|Mm7|chr7 (61171393-61171083) | |
| 304-614, gnl|monDom2|scaffold_12 (58176005-58176357) | |
| 304-614, gnl|oryCun1|scaffold_179611 (17151-17490) | |
| 304-614, gnl|panTro1|chr16 (19240844-19240504) | |
| 304-614, gnl|rheMac2|chr7 (8805566-8805906) | |
| 304-614, gnl|rn3|chr1 (119781183-119781520) | |
| 304-614, gnl|tetNig1|chr13 (12185487-12185156) | |
| 304-614, gnl|xenTro1|scaffold_676 (46248-46594) | |
| 654-920, gnl|bosTau2|chr21 (11885-12159) | |
| 654-920, gnl|Hg17|chr15 (27798286-27798021) | |
| 654-920, gnl|Mm7|chr7 (61171073-61170781) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| cov (0.132153) |