Ss1.1-Pig4-TMW8004L13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACCATTAGCAGCTTCCCCCAGCTGAAGAGGCACAAGGGAAAAGAGACTGCGGCCATGA AAGCTGATCTCCTGAGGGCCAGGAACATGAAAAGGTACATCAACCAGCTGACTGTGGCCA AGAAGCAGTGCGAGAAGAGGATCAGAAATCTGGGAGGCCCTGCCTATGACCAGCAAGAGG ATGGGGCCTTAGATGAGGGGGAAGGGCCTCAAAGCCAGAAGATTCTTCAATTTGACGATA TCTTGGCCAGTACTTTCTACCGAGAGCACTTTCGAAATTACATGGAAAGGATGGACAAGA GAGCTCTGATTAGTTTTTGGGAGTCTGTGGAATATTTAAAGAACGCTAACAATAGTGAAA TCCCACAATTAGTTGGTGAAATTTATCAGAATTTCTTTGTGGAGAGCAAAGAAATATCCG TGGAAAAGTCACTTTACAAAGAAATACAGCAGTGTCTTGTTGGAAATAAAGGAATTGACG TGTTTTGCAAAATCCAGGGAGATGTTTATGAGACCCTGAAGGATAGGTATTACCCTTCAT TTATTGTCAGTGACCTGTATGAGAAATTGATGATGAAAGAGGAAGAAAAGCATGCCTCGC AGCTGACTTCCAACAAGGATGAAATGGGCCCAGGAGGTGAGGCTGGCGAGGAAGCTGTGG ATGAAGGCAGCAGTCGGATTAATGAACAAGCTAGTTTTGCTGTAAACAAACTACGAGAAC TAAATGAGAAACTTGAGTATAAAAGGCAAGCTCTAAATTCTATTCAAAATGCGCCAAAAC CTGATAAGAAGATTGTTTCTAAGTTGAAGGAGGAGATAATTCTAATAGAGAAAGAACGCA CAGATCTTCAGCTGCACATGGCAAGAACAGATTGGTGGTGCGAGAACCTTGGCATGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACCATTAGCAGCTTCCCCCAGCTGAAGAGGCACAAGGGAAAAGAGACTGCGGCCATGA AAGCTGATCTCCTGAGGGCCAGGAACATGAAAAGGTACATCAACCAGCTGACTGTGGCCA AGAAGCAGTGCGAGAAGAGGATCAGAAATCTGGGAGGCCCTGCCTATGACCAGCAAGAGG ATGGGGCCTTAGATGAGGGGGAAGGGCCTCAAAGCCAGAAGATTCTTCAATTTGACGATA TCTTGGCCAGTACTTTCTACCGAGAGCACTTTCGAAATTACATGGAAAGGATGGACAAGA GAGCTCTGATTAGTTTTTGGGAGTCTGTGGAATATTTAAAGAACGCTAACAATAGTGAAA TCCCACAATTAGTTGGTGAAATTTATCAGAATTTCTTTGTGGAGAGCAAAGAAATATCCG TGGAAAAGTCACTTTACAAAGAAATACAGCAGTGTCTTGTTGGAAATAAAGGAATTGACG TGTTTTGCAAAATCCAGGGAGATGTTTATGAGACCCTGAAGGATAGGTATTACCCTTCAT TTATTGTCAGTGACCTGTATGAGAAATTGATGATGAAAGAGGAAGAAAAGCATGCCTCGC AGCTGACTTCCAACAAGGATGAAATGGGCCCAGGAGGTGAGGCTGGCGAGGAAGCTGTGG ATGAAGGCAGCAGTCGGATTAATGAACAAGCTAGTTTTGCTGTAAACAAACTACGAGAAC TAAATGAGAAACTTGAGTATAAAAGGCAAGCTCTAAATTCTATTCAAAATGCGCCAAAAC CTGATAAGAAGATTGTTTCTAAGTTGAAGGAGGAGATAATTCTAATAGAGAAAGAACGCA CAGATCTTCAGCTGCACATGGCAAGAACAGATTGGTGGTGCGAGAACCTTGGCATGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 121-221, + strand, RNAz p=0.596091 | |
| 356-474, - strand, RNAz p=0.96091 | |
| 513-627, - strand, RNAz p=0.983282 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-221, + strand, RNAz p=0.596091 | |
| 356-474, - strand, RNAz p=0.96091 | |
| 513-627, - strand, RNAz p=0.983282 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 39-221, gnl|bosTau2|chr27 (9562084-9561902) | |
| 39-221, gnl|canFam2|chr16 (48273155-48272957) | |
| 39-221, gnl|danRer3|chrNA (104981518-104981332) | |
| 39-221, gnl|echTel1|scaffold_95336 (3213-3411) | |
| 39-221, gnl|fr1|chrUn (286462489-286462303) | |
| 39-221, gnl|galGal2|chr4 (39902715-39902516) | |
| 39-221, gnl|hg17|chr1 (207979503-207979686) | |
| 39-221, gnl|Hg17|chr4 (186606937-186607119) | |
| 39-221, gnl|loxAfr1|scaffold_22560 (80668-80866) | |
| 39-221, gnl|mm7|chr8 (44846104-44845907) | |
| 39-221, gnl|Mm7|chr8 (44846101-44845919) | |
| 39-221, gnl|monDom2|scaffold_9 (67574614-67574813) | |
| 39-221, gnl|oryCun1|scaffold_198125 (11751-11948) | |
| 39-221, gnl|panTro1|chr1 (191625556-191625741) | |
| 39-221, gnl|rheMac2|chr5 (177488697-177488895) | |
| 39-221, gnl|rn3|chr16 (49482005-49482202) | |
| 39-221, gnl|tetNig1|chrUn_random (135178388-135178574) | |
| 39-221, gnl|xenTro1|scaffold_99 (2131601-2131790) | |
| 356-627, gnl|bosTau2|chr27 (9555814-9555543) | |
| 356-627, gnl|Hg17|chr4 (186619833-186620104) | |
| 356-627, gnl|Mm7|chr8 (44833984-44833710) | |
| 790-900, gnl|bosTau2|chr27 (9551732-9551622) | |
| 790-900, gnl|canFam2|chr16 (48252066-48251899) | |
| 790-900, gnl|danRer3|chrNA (104968306-104968136) | |
| 790-900, gnl|echTel1|scaffold_316627 (600-434) | |
| 790-900, gnl|fr1|chrUn (286460807-286460658) | |
| 790-900, gnl|galGal2|chr4 (39891618-39891449) | |
| 790-900, gnl|hg17|chr4 (186635671-186635838) | |
| 790-900, gnl|Hg17|chr4 (186635680-186635790) | |
| 790-900, gnl|loxAfr1|scaffold_3469 (111040-110875) | |
| 790-900, gnl|mm7|chr8 (44827373-44827212) | |
| 790-900, gnl|Mm7|chr8 (44827362-44827252) | |
| 790-900, gnl|monDom2|scaffold_9 (67602364-67602544) | |
| 790-900, gnl|oryCun1|scaffold_86095 (4511-4672) | |
| 790-900, gnl|panTro1|chr3 (204844140-204844307) | |
| 790-900, gnl|rheMac2|chr5 (177426036-177426203) | |
| 790-900, gnl|rn3|chr16 (49502365-49502520) | |
| 790-900, gnl|tetNig1|chrUn_random (135180137-135180287) | |
| 790-900, gnl|xenTro1|scaffold_99 (2136239-2136385) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-221, gnl|bosTau2|chr27 (9562084-9561902) | |
| 39-221, gnl|canFam2|chr16 (48273155-48272957) | |
| 39-221, gnl|danRer3|chrNA (104981518-104981332) | |
| 39-221, gnl|echTel1|scaffold_95336 (3213-3411) | |
| 39-221, gnl|fr1|chrUn (286462489-286462303) | |
| 39-221, gnl|galGal2|chr4 (39902715-39902516) | |
| 39-221, gnl|hg17|chr1 (207979503-207979686) | |
| 39-221, gnl|Hg17|chr4 (186606937-186607119) | |
| 39-221, gnl|loxAfr1|scaffold_22560 (80668-80866) | |
| 39-221, gnl|mm7|chr8 (44846104-44845907) | |
| 39-221, gnl|Mm7|chr8 (44846101-44845919) | |
| 39-221, gnl|monDom2|scaffold_9 (67574614-67574813) | |
| 39-221, gnl|oryCun1|scaffold_198125 (11751-11948) | |
| 39-221, gnl|panTro1|chr1 (191625556-191625741) | |
| 39-221, gnl|rheMac2|chr5 (177488697-177488895) | |
| 39-221, gnl|rn3|chr16 (49482005-49482202) | |
| 39-221, gnl|tetNig1|chrUn_random (135178388-135178574) | |
| 39-221, gnl|xenTro1|scaffold_99 (2131601-2131790) | |
| 356-627, gnl|bosTau2|chr27 (9555814-9555543) | |
| 356-627, gnl|Hg17|chr4 (186619833-186620104) | |
| 356-627, gnl|Mm7|chr8 (44833984-44833710) | |
| 790-900, gnl|bosTau2|chr27 (9551732-9551622) | |
| 790-900, gnl|canFam2|chr16 (48252066-48251899) | |
| 790-900, gnl|danRer3|chrNA (104968306-104968136) | |
| 790-900, gnl|echTel1|scaffold_316627 (600-434) | |
| 790-900, gnl|fr1|chrUn (286460807-286460658) | |
| 790-900, gnl|galGal2|chr4 (39891618-39891449) | |
| 790-900, gnl|hg17|chr4 (186635671-186635838) | |
| 790-900, gnl|Hg17|chr4 (186635680-186635790) | |
| 790-900, gnl|loxAfr1|scaffold_3469 (111040-110875) | |
| 790-900, gnl|mm7|chr8 (44827373-44827212) | |
| 790-900, gnl|Mm7|chr8 (44827362-44827252) | |
| 790-900, gnl|monDom2|scaffold_9 (67602364-67602544) | |
| 790-900, gnl|oryCun1|scaffold_86095 (4511-4672) | |
| 790-900, gnl|panTro1|chr3 (204844140-204844307) | |
| 790-900, gnl|rheMac2|chr5 (177426036-177426203) | |
| 790-900, gnl|rn3|chr16 (49502365-49502520) | |
| 790-900, gnl|tetNig1|chrUn_random (135180137-135180287) | |
| 790-900, gnl|xenTro1|scaffold_99 (2136239-2136385) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pla (0.133672) |