Non-Coding RNA Search

Ss1.1-Pig4-TMW8004L20.5

Sequence:


               
               AACTGGCTGTTTATGTAATTCTTCACGCTCCTGTCTTAAGGCGTTGCTTTGAAACTACCT
TCTGCCGAGCCTGAATTTCGCTCGGCTGCACCTTCAAGCAATTTGGCCTAATCGGCTGCC
TTTGCCAGCACTCAGGGCTTTTGGCTTGGAGAGTGTTTGTAGTTTAGGGCAGCCGGGGAC
TCTTTCTCCTTTGTCACTACGAGTATGGAAAAATGAAACAGATGAATTATCAACTTGATT
TTTAAATGTCCTTTTAGATCAACCTCAGATCCCTCCTTTGCAAATATCTTCTGTTTGCCC
TTGATCTTTCCTTATCCCCACCCAGTGCTGATCCAGCAAACGTTTAAAGGTCGACCTTAT
CGTACCCGCCTGTCCGGCTGTTTTCTTATCACGAGGGATGGAGGTGATTTTAAAAATCAG
AGTAAAACTCAGAAACTCTGCCCTTTCAGCAGAATAATCAATAAATTTTTGAAATTCATT
GTTTCTTTTGTTAGGCTTGATGCCCACGAGGTATTTTCAAATTTAGAAAAATACACGTTG
AAAAGAAAAGCACAGAGAAGCTCAAAGATTATTTCATTTTGAGCACTTAGTATATTTAAA
ACAGCAACTGTGTAGGAATTCATTGTTTCTTATGATAGGCTTGATGCCCACCAGGTATTT
TCATATTTAGAACAATACACGTTGAAAAGAAAAGCACAGAGAAGCTCAAAGATTATTTCA
TTTTGAGCACTTAGTATATTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGGCTGTTTATGTAATTCTTCACGCTCCTGTCTTAAGGCGTTGCTTTGAAACTACCT
TCTGCCGAGCCTGAATTTCGCTCGGCTGCACCTTCAAGCAATTTGGCCTAATCGGCTGCC
TTTGCCAGCACTCAGGGCTTTTGGCTTGGAGAGTGTTTGTAGTTTAGGGCAGCCGGGGAC
TCTTTCTCCTTTGTCACTACGAGTATGGAAAAATGAAACAGATGAATTATCAACTTGATT
TTTAAATGTCCTTTTAGATCAACCTCAGATCCCTCCTTTGCAAATATCTTCTGTTTGCCC
TTGATCTTTCCTTATCCCCACCCAGTGCTGATCCAGCAAACGTTTAAAGGTCGACCTTAT
CGTACCCGCCTGTCCGGCTGTTTTCTTATCACGAGGGATGGAGGTGATTTTAAAAATCAG
AGTAAAACTCAGAAACTCTGCCCTTTCAGCAGAATAATCAATAAATTTTTGAAATTCATT
GTTTCTTTTGTTAGGCTTGATGCCCACGAGGTATTTTCAAATTTAGAAAAATACACGTTG
AAAAGAAAAGCACAGAGAAGCTCAAAGATTATTTCATTTTGAGCACTTAGTATATTTAAA
ACAGCAACTGTGTAGGAATTCATTGTTTCTTATGATAGGCTTGATGCCCACCAGGTATTT
TCATATTTAGAACAATACACGTTGAAAAGAAAAGCACAGAGAAGCTCAAAGATTATTTCA
TTTTGAGCACTTAGTATATTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-191, + strand, RNAz p=0.742937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-191, + strand, RNAz p=0.742937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-550, gnl|bosTau2|chr19 (28117756-28117217)
               

               
               1-550, gnl|Hg17|chr17 (46297779-46297110)
               

               
               1-550, gnl|Mm7|chr11 (94321350-94321977)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-550, gnl|bosTau2|chr19 (28117756-28117217)
               

               
               1-550, gnl|Hg17|chr17 (46297779-46297110)
               

               
               1-550, gnl|Mm7|chr11 (94321350-94321977)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-550, gnl\|bosTau2\|chr19 (28117756-28117217)
	1-550, gnl\|Hg17\|chr17 (46297779-46297110)
	1-550, gnl\|Mm7\|chr11 (94321350-94321977)