Non-Coding RNA Search

Ss1.1-Pig4-TMW8004M01.3

Sequence:


               
               TGCCTCAATCTTTAGAGGACGTTCAGTATCAGCATAGGATTTAACTATCAGATTCTCTCA
GAAACCTTTTCTCCTGAAAATTAGGTGCTGATAGGTATGGAAAGTTTCCTCGGTAGAGGT
GAGCTGAGGAGGAAGAATGCCCTGGTTCTGAGAACAAAGGTGAATAGCTCTGGGAAGATG
GCAGCCTTCATTGGCATTGAACTCGGCTTCCCAGCCTTACCCTTTGCCTAGAAAGTCGCT
GAAGTTTTTTAAGCAATAGAGGCTGAGCCTAATGCCCTAATTTATCTTTTTTTAAGGTCT
GATATCATGCTATAATTGCTTTAAAAGTGGAACAAAATGGAAGCATATCTAGCTAGCACT
TTTTAACTTTTGATAATTTTGTAAAATTAAGTATTTTTTAAAAGAAGGACGTAGTTTTTA
TATTTTCAAAATTAGTCATTGGATTATGTAAGTAACCTTGTTCCAGAGAAATTTCATCAT
GTATTTACTGTTTAAAGTGATTTTATTTATAAAATTATCAGTATTTTAATGTATTTAATG
TAGAATGTGGCTTTTAAAAAATAATGTATGTTTTTATTTTGCTGTAGAAAATTTTTTTAA
ATACTTGATTATCATATATTTTTAATTCCTCTCTCCCCTGAAGGCTTTAAGATGATTTGA
AAAGGTAATTGAAAAGGTAATTGATTGGATATTCCATTGAGTAAAGAGAAGTCAAAGATT
CTTTGCAGCTTTCTGACTTCAGTGTCTGGTGGCTTGTTTTCTCAATGGAGTAGGAAGCAA
AATTATTCACTCAGAGGTGGTTGAAGGGCGTGGGGATACGAGTGGGATACAGGCTTTGGG
GAAAAGAGTAAAAAGCAAATCCAGAATTAGGAAGGGGATTTGCAAACTGGAATGAAACAC
AAACTGAAGTTGAAACTGTAATTTCAGAATTTTGATATATGTAAAAATAAATTAAGCCAG
AGTTGGGACTTATGGGGCACAAGAACTAGAGTTGAGTGAGAGTGATTGAAATGAGTTTCC
CCTGGTCTTAATTGTATGGGGAAGAAAAGGCTTCTTGGGAGGAGCCTGTGCCTCTAGAAG
AAATGGAGAGGGGAGAGAGGACGTGAGAGCTCAGGGCAAGTTACAGGCAGAAGATAGGAC
CAACTGAAAACAAATCGTCTTTGATGGAGTTTGGTCATTGATGATGACAAAATAAAAACA
CTTATTCTGTGTCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTCAATCTTTAGAGGACGTTCAGTATCAGCATAGGATTTAACTATCAGATTCTCTCA
GAAACCTTTTCTCCTGAAAATTAGGTGCTGATAGGTATGGAAAGTTTCCTCGGTAGAGGT
GAGCTGAGGAGGAAGAATGCCCTGGTTCTGAGAACAAAGGTGAATAGCTCTGGGAAGATG
GCAGCCTTCATTGGCATTGAACTCGGCTTCCCAGCCTTACCCTTTGCCTAGAAAGTCGCT
GAAGTTTTTTAAGCAATAGAGGCTGAGCCTAATGCCCTAATTTATCTTTTTTTAAGGTCT
GATATCATGCTATAATTGCTTTAAAAGTGGAACAAAATGGAAGCATATCTAGCTAGCACT
TTTTAACTTTTGATAATTTTGTAAAATTAAGTATTTTTTAAAAGAAGGACGTAGTTTTTA
TATTTTCAAAATTAGTCATTGGATTATGTAAGTAACCTTGTTCCAGAGAAATTTCATCAT
GTATTTACTGTTTAAAGTGATTTTATTTATAAAATTATCAGTATTTTAATGTATTTAATG
TAGAATGTGGCTTTTAAAAAATAATGTATGTTTTTATTTTGCTGTAGAAAATTTTTTTAA
ATACTTGATTATCATATATTTTTAATTCCTCTCTCCCCTGAAGGCTTTAAGATGATTTGA
AAAGGTAATTGAAAAGGTAATTGATTGGATATTCCATTGAGTAAAGAGAAGTCAAAGATT
CTTTGCAGCTTTCTGACTTCAGTGTCTGGTGGCTTGTTTTCTCAATGGAGTAGGAAGCAA
AATTATTCACTCAGAGGTGGTTGAAGGGCGTGGGGATACGAGTGGGATACAGGCTTTGGG
GAAAAGAGTAAAAAGCAAATCCAGAATTAGGAAGGGGATTTGCAAACTGGAATGAAACAC
AAACTGAAGTTGAAACTGTAATTTCAGAATTTTGATATATGTAAAAATAAATTAAGCCAG
AGTTGGGACTTATGGGGCACAAGAACTAGAGTTGAGTGAGAGTGATTGAAATGAGTTTCC
CCTGGTCTTAATTGTATGGGGAAGAAAAGGCTTCTTGGGAGGAGCCTGTGCCTCTAGAAG
AAATGGAGAGGGGAGAGAGGACGTGAGAGCTCAGGGCAAGTTACAGGCAGAAGATAGGAC
CAACTGAAAACAAATCGTCTTTGATGGAGTTTGGTCATTGATGATGACAAAATAAAAACA
CTTATTCTGTGTCAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1-886, gnl|bosTau2|chr12 (33811169-33810314)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-886, gnl|bosTau2|chr12 (33811169-33810314)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               thg (0.126791)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               thg (0.126791)

	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	spl (0.143184)
	csk (0.140746)
	thg (0.126791)