Ss1.1-Pig4-TMW8004M05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAAGCTATTCACAAGAATGGTAAACAGAAGAAAATGAAGCGAAAATGGCCTGACACT GCAGAGAAAGGATCCAGCGCTTCCCTGAGGAGCAATGGCTCACAGGAACAGGATGGTAAA CCTAAAGAGAAGCAGCAGCCTGTGAGAATGAGTCAGGGGTTCATCAACCAACACACGGTG CAACGCCAGGGAAAACAAATTTGTAAATATTTTCTTGAAAGGAAATGTATTAAGGGAGAC CAGTGTAAATTTGACCATGATGCAGAAATAGAGAAGAAAAAGGAAATGTGTAAATTTTAT GTACAAGGATATTGTACCAGAGGCGAAAACTGTCTGTATTTGCATAATGAATATCCTTGC AAGTTTTACCATACAGGAGCAAAGTGTTATCAGGGAGAATATTGCAAGTTTTCACATGCT CCATTGACTGCTGAAACACAAGAACTGTTGGCTAAAGTTTTGGATCCTGAAAAGAAGTCA TCATGAAAATAAAATACATAAAAAAGCTTTGTATGGATGAAGAGTGCTTGTGTCTATGCC TGTTCAAGACTATTCAAAGCTTGATTCGGAGTGGTTTACAAGAGTCTTCATTTAAAGTGC CCTCTTGTGTCATTGTAATGATGTGCAGCTCTTTAATGGATGGCGCCGAGGGACAGAATG TAGTGTATGGCTGAAGGCTTGGTCTTCACCAGGATGGCTCTAGCCAATGAAACAGGGGAC GAGCAATGTGACAGAGATGCTGGCTGGTGCATAAATGTTTTGGTAGTAAACTGCAGAAGT CTCTTCCGATTGCGTTTTGTCAATAAAATAAGGTTAGGTTGAGAATGGATGAAGCAACAA AGGAGATTTGAAGAGAGAAAACCACTGGCTTTCTCTAGGAAGATATTGGGATAATAGACA ATGAATATACAGCTAGATCTTTTCATTTCATTAAATTCACAGCATATTTTTAGTGGTTGC TCACAGTTCTGATTTATGGCTTACATTATGTTCTACAATTTTTTTAAAACTAATTTTCTG TTGTTGGACAATAAAGTTGTTTCAGATTTTTACTATTATAAATAAAATGGAACAGTGTCT CTTGTTATACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAAGCTATTCACAAGAATGGTAAACAGAAGAAAATGAAGCGAAAATGGCCTGACACT GCAGAGAAAGGATCCAGCGCTTCCCTGAGGAGCAATGGCTCACAGGAACAGGATGGTAAA CCTAAAGAGAAGCAGCAGCCTGTGAGAATGAGTCAGGGGTTCATCAACCAACACACGGTG CAACGCCAGGGAAAACAAATTTGTAAATATTTTCTTGAAAGGAAATGTATTAAGGGAGAC CAGTGTAAATTTGACCATGATGCAGAAATAGAGAAGAAAAAGGAAATGTGTAAATTTTAT GTACAAGGATATTGTACCAGAGGCGAAAACTGTCTGTATTTGCATAATGAATATCCTTGC AAGTTTTACCATACAGGAGCAAAGTGTTATCAGGGAGAATATTGCAAGTTTTCACATGCT CCATTGACTGCTGAAACACAAGAACTGTTGGCTAAAGTTTTGGATCCTGAAAAGAAGTCA TCATGAAAATAAAATACATAAAAAAGCTTTGTATGGATGAAGAGTGCTTGTGTCTATGCC TGTTCAAGACTATTCAAAGCTTGATTCGGAGTGGTTTACAAGAGTCTTCATTTAAAGTGC CCTCTTGTGTCATTGTAATGATGTGCAGCTCTTTAATGGATGGCGCCGAGGGACAGAATG TAGTGTATGGCTGAAGGCTTGGTCTTCACCAGGATGGCTCTAGCCAATGAAACAGGGGAC GAGCAATGTGACAGAGATGCTGGCTGGTGCATAAATGTTTTGGTAGTAAACTGCAGAAGT CTCTTCCGATTGCGTTTTGTCAATAAAATAAGGTTAGGTTGAGAATGGATGAAGCAACAA AGGAGATTTGAAGAGAGAAAACCACTGGCTTTCTCTAGGAAGATATTGGGATAATAGACA ATGAATATACAGCTAGATCTTTTCATTTCATTAAATTCACAGCATATTTTTAGTGGTTGC TCACAGTTCTGATTTATGGCTTACATTATGTTCTACAATTTTTTTAAAACTAATTTTCTG TTGTTGGACAATAAAGTTGTTTCAGATTTTTACTATTATAAATAAAATGGAACAGTGTCT CTTGTTATACCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 110-235, gnl|bosTau2|chr6 (54259771-54259896) | |
| 110-235, gnl|canFam2|chr17 (39713228-39713412) | |
| 110-235, gnl|danRer3|chr6 (4560866-4560706) | |
| 110-235, gnl|dasNov1|scaffold_18669 (43031-43200) | |
| 110-235, gnl|echTel1|scaffold_288028 (91488-91663) | |
| 110-235, gnl|hg17|chr2 (112707861-112708014) | |
| 110-235, gnl|Hg17|chr2 (112708046-112707927) | |
| 110-235, gnl|loxAfr1|scaffold_213142 (540-697) | |
| 110-235, gnl|mm7|chr2 (128672039-128672223) | |
| 110-235, gnl|Mm7|chr2 (128672255-128672130) | |
| 110-235, gnl|monDom2|scaffold_1 (63219929-63220068) | |
| 110-235, gnl|oryCun1|scaffold_153095 (10904-11088) | |
| 110-235, gnl|panTro1|chr12 (115837321-115837474) | |
| 110-235, gnl|rheMac2|chr13 (111650211-111650364) | |
| 110-235, gnl|rn3|chr3 (116458482-116458663) | |
| 110-235, gnl|tetNig1|chr17 (3246190-3246022) | |
| 110-235, gnl|xenTro1|scaffold_658 (217658-217810) | |
| 347-458, gnl|bosTau2|chr6 (54261717-54261828) | |
| 347-458, gnl|canFam2|chr17 (39710900-39711002) | |
| 347-458, gnl|danRer3|chr6 (4561227-4561125) | |
| 347-458, gnl|dasNov1|scaffold_18669 (40496-40598) | |
| 347-458, gnl|echTel1|scaffold_288028 (88507-88609) | |
| 347-458, gnl|hg17|chr2 (112705645-112705747) | |
| 347-458, gnl|Hg17|chr2 (112705755-112705644) | |
| 347-458, gnl|loxAfr1|scaffold_6607 (52376-52478) | |
| 347-458, gnl|mm7|chr2 (128670699-128670801) | |
| 347-458, gnl|Mm7|chr2 (128670809-128670698) | |
| 347-458, gnl|oryCun1|scaffold_176468 (44502-44400) | |
| 347-458, gnl|panTro1|chr12 (115835095-115835197) | |
| 347-458, gnl|rheMac2|chr13 (111647969-111648071) | |
| 347-458, gnl|rn3|chr3 (116457215-116457317) | |
| 347-458, gnl|tetNig1|chr17 (3246548-3246446) | |
| 347-458, gnl|xenTro1|scaffold_658 (215169-215271) | |
| 505-1091, gnl|bosTau2|chr6 (54266187-54266785) | |
| 505-1091, gnl|canFam2|chr17 (39700706-39701311) | |
| 505-1091, gnl|hg17|chr2 (112689680-112690313) | |
| 505-1091, gnl|Hg17|chr2 (112690278-112689679) | |
| 505-1091, gnl|mm7|chr2 (128667118-128667692) | |
| 505-1091, gnl|Mm7|chr2 (128667666-128667117) | |
| 505-1091, gnl|oryCun1|scaffold_153095 (3321-3917) | |
| 505-1091, gnl|panTro1|chr12 (115819133-115819765) | |
| 505-1091, gnl|rheMac2|chr13 (111632387-111633009) | |
| 505-1091, gnl|rn3|chr3 (116453793-116454349) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-235, gnl|bosTau2|chr6 (54259771-54259896) | |
| 110-235, gnl|canFam2|chr17 (39713228-39713412) | |
| 110-235, gnl|danRer3|chr6 (4560866-4560706) | |
| 110-235, gnl|dasNov1|scaffold_18669 (43031-43200) | |
| 110-235, gnl|echTel1|scaffold_288028 (91488-91663) | |
| 110-235, gnl|hg17|chr2 (112707861-112708014) | |
| 110-235, gnl|Hg17|chr2 (112708046-112707927) | |
| 110-235, gnl|loxAfr1|scaffold_213142 (540-697) | |
| 110-235, gnl|mm7|chr2 (128672039-128672223) | |
| 110-235, gnl|Mm7|chr2 (128672255-128672130) | |
| 110-235, gnl|monDom2|scaffold_1 (63219929-63220068) | |
| 110-235, gnl|oryCun1|scaffold_153095 (10904-11088) | |
| 110-235, gnl|panTro1|chr12 (115837321-115837474) | |
| 110-235, gnl|rheMac2|chr13 (111650211-111650364) | |
| 110-235, gnl|rn3|chr3 (116458482-116458663) | |
| 110-235, gnl|tetNig1|chr17 (3246190-3246022) | |
| 110-235, gnl|xenTro1|scaffold_658 (217658-217810) | |
| 347-458, gnl|bosTau2|chr6 (54261717-54261828) | |
| 347-458, gnl|canFam2|chr17 (39710900-39711002) | |
| 347-458, gnl|danRer3|chr6 (4561227-4561125) | |
| 347-458, gnl|dasNov1|scaffold_18669 (40496-40598) | |
| 347-458, gnl|echTel1|scaffold_288028 (88507-88609) | |
| 347-458, gnl|hg17|chr2 (112705645-112705747) | |
| 347-458, gnl|Hg17|chr2 (112705755-112705644) | |
| 347-458, gnl|loxAfr1|scaffold_6607 (52376-52478) | |
| 347-458, gnl|mm7|chr2 (128670699-128670801) | |
| 347-458, gnl|Mm7|chr2 (128670809-128670698) | |
| 347-458, gnl|oryCun1|scaffold_176468 (44502-44400) | |
| 347-458, gnl|panTro1|chr12 (115835095-115835197) | |
| 347-458, gnl|rheMac2|chr13 (111647969-111648071) | |
| 347-458, gnl|rn3|chr3 (116457215-116457317) | |
| 347-458, gnl|tetNig1|chr17 (3246548-3246446) | |
| 347-458, gnl|xenTro1|scaffold_658 (215169-215271) | |
| 505-1091, gnl|bosTau2|chr6 (54266187-54266785) | |
| 505-1091, gnl|canFam2|chr17 (39700706-39701311) | |
| 505-1091, gnl|hg17|chr2 (112689680-112690313) | |
| 505-1091, gnl|Hg17|chr2 (112690278-112689679) | |
| 505-1091, gnl|mm7|chr2 (128667118-128667692) | |
| 505-1091, gnl|Mm7|chr2 (128667666-128667117) | |
| 505-1091, gnl|oryCun1|scaffold_153095 (3321-3917) | |
| 505-1091, gnl|panTro1|chr12 (115819133-115819765) | |
| 505-1091, gnl|rheMac2|chr13 (111632387-111633009) | |
| 505-1091, gnl|rn3|chr3 (116453793-116454349) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| lin (0.436808) | |
| fco (0.314416) | |
| kid (0.259471) | |
| sin (0.174948) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| lin (0.436808) | |
| fco (0.314416) | |
| kid (0.259471) | |
| sin (0.174948) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| spc (0.113366) |