Non-Coding RNA Search

Ss1.1-Pig4-TMW8004M11.5

Sequence:


               
               CGGTAAATTACTTTCTGCTCAAATCGAAATTTCATTCAGTTTGTTGCTAGCAGAGATGAA
GTAATCTAAATTGTGGACTCAGGAGCAGATAGAGGGAAGTTGGAGCAAGCATTTCATTAT
CAAGAGAGAGAGAAGGTTAGGATGAAAGAGATGAGCAGAGGCAAATCTTAAGTGTTGACA
CCATGATTGAAAAGGTTAACCCATCCGCATTATATATCAACCTGGTAGCAGAGAGTTTCT
AATGGAAAGTCTGCACTGATGGAGGTTTACCCGAGTTTCAATACACCGAGCATGATGTCT
TCTTAGATATACAATCAAATCCTCTTAACCCTTTTGATGACTCATATCTCAAGATATGAT
TAAAGTACAAAAGAGTTCTTCATATAGTTTCAAGGACACCATGCATTTAAACTCCAGGCA
TGAATTGTATCTGTGTGTGTGAGTGTGTGATGAACTCNGTAATCTGATAAAATGTGTGTA
GAACAGAATTGTTTGGTATTTGCTAGAGGCGTAAGTCAACATCCTGATTAAACCCGGGGC
ATCTTCTTCTCTGCGGTAGGCAGAAGTGAGTTGGGACCCCCAAAAGGATTTTTTTTCCCA
GATCATGCAAATCGCTCCTAAAATCCGAGGCCTGAGCCTCAGCATTCAGCCTCTGTCAAA
TACATTCCAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTAAATTACTTTCTGCTCAAATCGAAATTTCATTCAGTTTGTTGCTAGCAGAGATGAA
GTAATCTAAATTGTGGACTCAGGAGCAGATAGAGGGAAGTTGGAGCAAGCATTTCATTAT
CAAGAGAGAGAGAAGGTTAGGATGAAAGAGATGAGCAGAGGCAAATCTTAAGTGTTGACA
CCATGATTGAAAAGGTTAACCCATCCGCATTATATATCAACCTGGTAGCAGAGAGTTTCT
AATGGAAAGTCTGCACTGATGGAGGTTTACCCGAGTTTCAATACACCGAGCATGATGTCT
TCTTAGATATACAATCAAATCCTCTTAACCCTTTTGATGACTCATATCTCAAGATATGAT
TAAAGTACAAAAGAGTTCTTCATATAGTTTCAAGGACACCATGCATTTAAACTCCAGGCA
TGAATTGTATCTGTGTGTGTGAGTGTGTGATGAACTCNGTAATCTGATAAAATGTGTGTA
GAACAGAATTGTTTGGTATTTGCTAGAGGCGTAAGTCAACATCCTGATTAAACCCGGGGC
ATCTTCTTCTCTGCGGTAGGCAGAAGTGAGTTGGGACCCCCAAAAGGATTTTTTTTCCCA
GATCATGCAAATCGCTCCTAAAATCCGAGGCCTGAGCCTCAGCATTCAGCCTCTGTCAAA
TACATTCCAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-438, - strand, RNAz p=0.947523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-438, - strand, RNAz p=0.947523

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               304-429, - strand, RNAmicro p=0.909204

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               304-429, - strand, RNAmicro p=0.909204

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-670, gnl|bosTau2|chr3 (41494646-41493978)
               

               
               1-670, gnl|Hg17|chr1 (87516500-87517151)
               

               
               1-670, gnl|Mm7|chr3 (144088283-144087537)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-670, gnl|bosTau2|chr3 (41494646-41493978)
               

               
               1-670, gnl|Hg17|chr1 (87516500-87517151)
               

               
               1-670, gnl|Mm7|chr3 (144088283-144087537)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-670, gnl\|bosTau2\|chr3 (41494646-41493978)
	1-670, gnl\|Hg17\|chr1 (87516500-87517151)
	1-670, gnl\|Mm7\|chr3 (144088283-144087537)