Ss1.1-Pig4-TMW8004P01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAATTTCCGACAGCGTAGCTTTGGTTTCTCCCCCCGGCTTTGGGGTTCGAAGGTTCGA GTCCCACGACGGGAATGAGCCTCTTTGATCTCTTTCGGGGATTTTTCGGCTTTTCTAGAC CTCGGAGCCACAGAGATCCCTTTTTTGGAGGGATGACTCGCGACGAAGATGAAGATGATG AAGAGGAAGAAGCCAGATGGAGCCAGGGGAGCTCGAGGTTTGAAGGTCCCCAGCCTCCCG AGGAATTTGGCTTTGGCTTCAGCTTCAGCCCAGGAGGAGGAATGCGTTTCCACGATAATT TTGGCTTCGATGACTTAGTACGGGATTTCAATAGTATCTTCAGCGAGATGGGGGCCTGGA CCTTGCCTTCCCGTCCTCCTGAACTTCCAGGTCCTGAGATAGAGACACCTGGTGAGAGAC GGCAGGAAGGACAGACACTTCGGGACTCAATGCTTAAGTATCCAGATAGTCACCAGCCCA GGATCTTTGGTGGGGGCCTGGAGAGTGATGCAAAAACTGAATCCCCCAAACCAGTACCAG ACTGGGATTCCCAGAGACCTTTTCATAGGTTTGATGATATGTGGCCTGTGACCCCCAGTT CTAGAGCCAGAGAGGATAATGATCTTGATTCCCAGGTTTCCCAGGAGGGCCTTGGCCCAG TTCTGCAACCCCAGCCCAAATCCTATTTCAAGAGCATCTCTGTGACCAAGATCACTAAGC CAGATGGGACAGTAGAGGAGCGCCGGACTGTGGTGGACAGTGAGGGCCGGAAAGAGACCA CAGTAACCCATCAAGAGGCAGGTGACAGTCCTAGAGATGGTCCAGAATCAGCAACACCTC CATCCCTGGATGATGCCTTTTCCATCCTGGATTTGTTCCTAGGACGTTGGTTCCGGCCCC GGTAGCCTTGTGAACCCTCAGAGGCCTTTAGGTTCTTTCTCTCTCCCACCCTTTGCCTGC TGTCAGTGGGCTTAGTTCTTCTCCTGCCACCTCAGGGCCTTGTGTGTGTGGAACAGTGAA TTGGGGGTATGTTAGTATGTCACTCACCCTAATGACCAATAAAACCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAATTTCCGACAGCGTAGCTTTGGTTTCTCCCCCCGGCTTTGGGGTTCGAAGGTTCGA GTCCCACGACGGGAATGAGCCTCTTTGATCTCTTTCGGGGATTTTTCGGCTTTTCTAGAC CTCGGAGCCACAGAGATCCCTTTTTTGGAGGGATGACTCGCGACGAAGATGAAGATGATG AAGAGGAAGAAGCCAGATGGAGCCAGGGGAGCTCGAGGTTTGAAGGTCCCCAGCCTCCCG AGGAATTTGGCTTTGGCTTCAGCTTCAGCCCAGGAGGAGGAATGCGTTTCCACGATAATT TTGGCTTCGATGACTTAGTACGGGATTTCAATAGTATCTTCAGCGAGATGGGGGCCTGGA CCTTGCCTTCCCGTCCTCCTGAACTTCCAGGTCCTGAGATAGAGACACCTGGTGAGAGAC GGCAGGAAGGACAGACACTTCGGGACTCAATGCTTAAGTATCCAGATAGTCACCAGCCCA GGATCTTTGGTGGGGGCCTGGAGAGTGATGCAAAAACTGAATCCCCCAAACCAGTACCAG ACTGGGATTCCCAGAGACCTTTTCATAGGTTTGATGATATGTGGCCTGTGACCCCCAGTT CTAGAGCCAGAGAGGATAATGATCTTGATTCCCAGGTTTCCCAGGAGGGCCTTGGCCCAG TTCTGCAACCCCAGCCCAAATCCTATTTCAAGAGCATCTCTGTGACCAAGATCACTAAGC CAGATGGGACAGTAGAGGAGCGCCGGACTGTGGTGGACAGTGAGGGCCGGAAAGAGACCA CAGTAACCCATCAAGAGGCAGGTGACAGTCCTAGAGATGGTCCAGAATCAGCAACACCTC CATCCCTGGATGATGCCTTTTCCATCCTGGATTTGTTCCTAGGACGTTGGTTCCGGCCCC GGTAGCCTTGTGAACCCTCAGAGGCCTTTAGGTTCTTTCTCTCTCCCACCCTTTGCCTGC TGTCAGTGGGCTTAGTTCTTCTCCTGCCACCTCAGGGCCTTGTGTGTGTGGAACAGTGAA TTGGGGGTATGTTAGTATGTCACTCACCCTAATGACCAATAAAACCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 819-934, - strand, RNAz p=0.786273 | |
| 819-932, - strand, RNAz p=0.914194 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 819-934, - strand, RNAz p=0.786273 | |
| 819-932, - strand, RNAz p=0.914194 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 126-381, gnl|bosTau2|chr3 (8365148-8365412) | |
| 126-381, gnl|canFam2|chr5 (39398757-39398498) | |
| 126-381, gnl|canFam2|chr7 (45946843-45946685) | |
| 126-381, gnl|danRer3|chr19 (2499173-2499305) | |
| 126-381, gnl|dasNov1|scaffold_276131 (918-754) | |
| 126-381, gnl|dasNov1|scaffold_65257 (6461-6233) | |
| 126-381, gnl|echTel1|scaffold_277720 (46057-46209) | |
| 126-381, gnl|echTel1|scaffold_277720 (46312-46057) | |
| 126-381, gnl|fr1|chrUn (156461228-156461084) | |
| 126-381, gnl|hg17|chr1 (151058884-151059045) | |
| 126-381, gnl|Hg17|chr1 (151058883-151059147) | |
| 126-381, gnl|hg17|chrX (146985598-146985894) | |
| 126-381, gnl|loxAfr1|scaffold_1889 (32508-32353) | |
| 126-381, gnl|loxAfr1|scaffold_1889 (32250-32506) | |
| 126-381, gnl|mm7|chr2 (170078011-170077741) | |
| 126-381, gnl|mm7|chr3 (90128664-90128500) | |
| 126-381, gnl|Mm7|chr3 (90128663-90128396) | |
| 126-381, gnl|monDom2|scaffold_59 (3810096-3809947) | |
| 126-381, gnl|monDom2|scaffold_59 (3809844-3810096) | |
| 126-381, gnl|oryCun1|scaffold_83006 (3668-3818) | |
| 126-381, gnl|oryCun1|scaffold_83006 (3921-3668) | |
| 126-381, gnl|panTro1|chr1 (133041363-133041525) | |
| 126-381, gnl|panTro1|chrX_random (25813031-25812754) | |
| 126-381, gnl|rheMac2|chr1 (132801841-132802002) | |
| 126-381, gnl|rheMac2|chrX (146309622-146309902) | |
| 126-381, gnl|rn3|chr17 (58539766-58539932) | |
| 126-381, gnl|rn3|chr17 (58540035-58539766) | |
| 126-381, gnl|tetNig1|chr21_random (2413487-2413634) | |
| 621-746, gnl|bosTau2|chr3 (8390331-8390456) | |
| 621-746, gnl|canFam2|chr7 (45945168-45945056) | |
| 621-746, gnl|dasNov1|scaffold_285627 (368-480) | |
| 621-746, gnl|echTel1|scaffold_277720 (47268-47380) | |
| 621-746, gnl|fr1|chrUn (156460506-156460367) | |
| 621-746, gnl|hg17|chr1 (151060703-151060815) | |
| 621-746, gnl|Hg17|chr1 (151060702-151060827) | |
| 621-746, gnl|loxAfr1|scaffold_2250 (38469-38365) | |
| 621-746, gnl|mm7|chr3 (90126777-90126665) | |
| 621-746, gnl|Mm7|chr3 (90126776-90126651) | |
| 621-746, gnl|monDom2|scaffold_59 (3808674-3808562) | |
| 621-746, gnl|oryCun1|scaffold_83006 (4812-4924) | |
| 621-746, gnl|panTro1|chr1 (133050517-133050629) | |
| 621-746, gnl|rheMac2|chr1 (132803704-132803816) | |
| 621-746, gnl|rn3|chr17 (58540275-58540382) | |
| 621-746, gnl|tetNig1|chr21_random (2414202-2414323) | |
| 819-1068, gnl|bosTau2|chr3 (8390801-8391053) | |
| 819-1068, gnl|canFam2|chr5 (39399454-39399298) | |
| 819-1068, gnl|dasNov1|scaffold_285627 (1089-925) | |
| 819-1068, gnl|echTel1|scaffold_277720 (48024-47862) | |
| 819-1068, gnl|Hg17|chr1 (151061164-151061412) | |
| 819-1068, gnl|hg17|chrX (146984900-146985065) | |
| 819-1068, gnl|loxAfr1|scaffold_1889 (30507-30660) | |
| 819-1068, gnl|mm7|chr2 (170078706-170078546) | |
| 819-1068, gnl|Mm7|chr3 (90126369-90126124) | |
| 819-1068, gnl|monDom2|scaffold_59 (3807589-3807775) | |
| 819-1068, gnl|oryCun1|scaffold_83006 (5531-5375) | |
| 819-1068, gnl|panTro1|chrX (152168109-152168275) | |
| 819-1068, gnl|rheMac2|chrX (146308919-146309086) | |
| 819-1068, gnl|rn3|chr17 (58540733-58540570) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-381, gnl|bosTau2|chr3 (8365148-8365412) | |
| 126-381, gnl|canFam2|chr5 (39398757-39398498) | |
| 126-381, gnl|canFam2|chr7 (45946843-45946685) | |
| 126-381, gnl|danRer3|chr19 (2499173-2499305) | |
| 126-381, gnl|dasNov1|scaffold_276131 (918-754) | |
| 126-381, gnl|dasNov1|scaffold_65257 (6461-6233) | |
| 126-381, gnl|echTel1|scaffold_277720 (46057-46209) | |
| 126-381, gnl|echTel1|scaffold_277720 (46312-46057) | |
| 126-381, gnl|fr1|chrUn (156461228-156461084) | |
| 126-381, gnl|hg17|chr1 (151058884-151059045) | |
| 126-381, gnl|Hg17|chr1 (151058883-151059147) | |
| 126-381, gnl|hg17|chrX (146985598-146985894) | |
| 126-381, gnl|loxAfr1|scaffold_1889 (32508-32353) | |
| 126-381, gnl|loxAfr1|scaffold_1889 (32250-32506) | |
| 126-381, gnl|mm7|chr2 (170078011-170077741) | |
| 126-381, gnl|mm7|chr3 (90128664-90128500) | |
| 126-381, gnl|Mm7|chr3 (90128663-90128396) | |
| 126-381, gnl|monDom2|scaffold_59 (3810096-3809947) | |
| 126-381, gnl|monDom2|scaffold_59 (3809844-3810096) | |
| 126-381, gnl|oryCun1|scaffold_83006 (3668-3818) | |
| 126-381, gnl|oryCun1|scaffold_83006 (3921-3668) | |
| 126-381, gnl|panTro1|chr1 (133041363-133041525) | |
| 126-381, gnl|panTro1|chrX_random (25813031-25812754) | |
| 126-381, gnl|rheMac2|chr1 (132801841-132802002) | |
| 126-381, gnl|rheMac2|chrX (146309622-146309902) | |
| 126-381, gnl|rn3|chr17 (58539766-58539932) | |
| 126-381, gnl|rn3|chr17 (58540035-58539766) | |
| 126-381, gnl|tetNig1|chr21_random (2413487-2413634) | |
| 621-746, gnl|bosTau2|chr3 (8390331-8390456) | |
| 621-746, gnl|canFam2|chr7 (45945168-45945056) | |
| 621-746, gnl|dasNov1|scaffold_285627 (368-480) | |
| 621-746, gnl|echTel1|scaffold_277720 (47268-47380) | |
| 621-746, gnl|fr1|chrUn (156460506-156460367) | |
| 621-746, gnl|hg17|chr1 (151060703-151060815) | |
| 621-746, gnl|Hg17|chr1 (151060702-151060827) | |
| 621-746, gnl|loxAfr1|scaffold_2250 (38469-38365) | |
| 621-746, gnl|mm7|chr3 (90126777-90126665) | |
| 621-746, gnl|Mm7|chr3 (90126776-90126651) | |
| 621-746, gnl|monDom2|scaffold_59 (3808674-3808562) | |
| 621-746, gnl|oryCun1|scaffold_83006 (4812-4924) | |
| 621-746, gnl|panTro1|chr1 (133050517-133050629) | |
| 621-746, gnl|rheMac2|chr1 (132803704-132803816) | |
| 621-746, gnl|rn3|chr17 (58540275-58540382) | |
| 621-746, gnl|tetNig1|chr21_random (2414202-2414323) | |
| 819-1068, gnl|bosTau2|chr3 (8390801-8391053) | |
| 819-1068, gnl|canFam2|chr5 (39399454-39399298) | |
| 819-1068, gnl|dasNov1|scaffold_285627 (1089-925) | |
| 819-1068, gnl|echTel1|scaffold_277720 (48024-47862) | |
| 819-1068, gnl|Hg17|chr1 (151061164-151061412) | |
| 819-1068, gnl|hg17|chrX (146984900-146985065) | |
| 819-1068, gnl|loxAfr1|scaffold_1889 (30507-30660) | |
| 819-1068, gnl|mm7|chr2 (170078706-170078546) | |
| 819-1068, gnl|Mm7|chr3 (90126369-90126124) | |
| 819-1068, gnl|monDom2|scaffold_59 (3807589-3807775) | |
| 819-1068, gnl|oryCun1|scaffold_83006 (5531-5375) | |
| 819-1068, gnl|panTro1|chrX (152168109-152168275) | |
| 819-1068, gnl|rheMac2|chrX (146308919-146309086) | |
| 819-1068, gnl|rn3|chr17 (58540733-58540570) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| eje (0.296501) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| che (0.136314) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.296501) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| eye (0.170503) | |
| che (0.136314) | |
| ebs (0.118301) | |
| ldo (0.0970026) |