Non-Coding RNA Search

Ss1.1-Pig4-TMW8005B04.3

Sequence:


               
               CCCCACCCCCCTCCAGCCATCCGTTCTGAATTCTTTCTCTAAGGACTGCGATCGTCTGAA
GAGCCGAGTTTGCAGCATGGGTCTGGCTGGGTTCGATGATGGCAAATTCCTATCTGCATC
CAGTCAAGTTTGAGCTGGCCTAGGGGTGGCTCTTTGTGGCGGTCCACCCTTGCCTACGGC
TCATTCTGGAAATTAAAACACTTCAGTGAGACCAGCTTTTCATCAACTGAAGCCCGGTGT
GCTGGGCCTGACAGTCACACTACATGCACTGCCTTCAGGAGTGAGTGCGCTCCTGGCCCC
TACCTGGAACCTTGTCGGGGGAGGCCTCCAGCTCCCTTGCCCTGTCAGCCACCTCTGAGT
CCCCACCAGGTGCCTTCCTGGGTGGATTCGTTAGGGTGACTGGCCCTCTCCAGCCCTTTC
CTTCACCTGTCTCAGCATCAGTTGTTTTCTATGAAAACAGTGGATTGGTTGGGTTTTGTG
CAGGGTCTATGGTTAGAGCCACAATGGATTTGAGGATGAGTATTTTTCTTTTTCTTTTGG
TTTTGTATATTTTGTACATTAATAATAAACAGTGGAAAGAGAAGCAACTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACCCCCCTCCAGCCATCCGTTCTGAATTCTTTCTCTAAGGACTGCGATCGTCTGAA
GAGCCGAGTTTGCAGCATGGGTCTGGCTGGGTTCGATGATGGCAAATTCCTATCTGCATC
CAGTCAAGTTTGAGCTGGCCTAGGGGTGGCTCTTTGTGGCGGTCCACCCTTGCCTACGGC
TCATTCTGGAAATTAAAACACTTCAGTGAGACCAGCTTTTCATCAACTGAAGCCCGGTGT
GCTGGGCCTGACAGTCACACTACATGCACTGCCTTCAGGAGTGAGTGCGCTCCTGGCCCC
TACCTGGAACCTTGTCGGGGGAGGCCTCCAGCTCCCTTGCCCTGTCAGCCACCTCTGAGT
CCCCACCAGGTGCCTTCCTGGGTGGATTCGTTAGGGTGACTGGCCCTCTCCAGCCCTTTC
CTTCACCTGTCTCAGCATCAGTTGTTTTCTATGAAAACAGTGGATTGGTTGGGTTTTGTG
CAGGGTCTATGGTTAGAGCCACAATGGATTTGAGGATGAGTATTTTTCTTTTTCTTTTGG
TTTTGTATATTTTGTACATTAATAATAAACAGTGGAAAGAGAAGCAACTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               301-413, - strand, RNAz p=0.832079

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-413, - strand, RNAz p=0.832079

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               69-584, gnl|bosTau2|chr23 (20891347-20891858)
               

               
               69-584, gnl|Hg17|chr6 (30676687-30676168)
               

               
               69-584, gnl|Mm7|chr17 (34036019-34036445)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-584, gnl|bosTau2|chr23 (20891347-20891858)
               

               
               69-584, gnl|Hg17|chr6 (30676687-30676168)
               

               
               69-584, gnl|Mm7|chr17 (34036019-34036445)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	69-584, gnl\|bosTau2\|chr23 (20891347-20891858)
	69-584, gnl\|Hg17\|chr6 (30676687-30676168)
	69-584, gnl\|Mm7\|chr17 (34036019-34036445)

	fce (0.271592)
	nca (0.136874)
	eru (0.120048)
	pgl (0.118483)
	nbm (0.0993246)