Ss1.1-Pig4-TMW8005B09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCTGTGTGCAACTTGGTTGCTTCCCTCCCCCTGTGGTTGCCTAAATCCTTGAGCCCT GGCTCTGGGCGGGAGCTGCAGAGACTCTCCTATTTGGGGGCTTTCTTTAGCTTCTCCGTC TTTGCCGAAGATGACGCTAAAGTGGTTGAAAAATATTTCTCAGGGCCTGCCATTACCCTG GAAAACACGCGTGTGGTGAGCCAGTCGCTGCAGCATTACTTGGAGCTGGGAAGGCAAGAG CTTTTCAAGATTCTGCATAGTATTTTGTTAAATGGTGAAACCCGCGAGGCTGCTCTTGGT TACATGGCGGCTGTCGTCAACGCCAATATGAAGAAAGCACAGATGCAGACAGATGATAGA CTGGTATCTACAGATGGATTTATGCTGAATTTCCTTTGGGTGCTGCAGCAGCTAAGTACC AAGATCAAGCTAGAGACAGTCGACCCCACTTATATATTCCACCCAAGGTGTCGGATTACT CTTCCCAACGATGAGACGAGAGTAAATGCGACGATGGAGGATGTGAATGACTGGCTGACT GAACTTTATGGAGATCAGCCTCCATATTCTGAGCCGAAATTCCCTACAGAATGCTTCTTT CTCACCCTGCACGCCCACCACCTCTCTATTCTGCCGAGCTGCCGTCGCTATATCCGCAGA CTCCGGGCCATCCGGGAGCTCAATAGAACTGTGGAAGATTTGAAAAATAATGAAAGCCAG TGGAAAGATTCCCCACTGGCAACTAGACACCGTGAAATGCTGAAGCGCTGCAAGACTCAG CTTAAGAAACTGGTACGATGCAAGGCCTGTGCCGACGCTGGCTTACTTGACGAGAGCTTC CTGAGAAGATGTCTGAATTTTTACGGGCTTCTCATTCAGCTGCTGCTCCGCATCCTGGAC CCCACCCCCACCATGTAACACTGCCTTTAAATTCCGATGTCCCCAAGGTATTTGCAGCAT TGCCTGAGTTTTATGTAGAAGATGTTGCTGAATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCTGTGTGCAACTTGGTTGCTTCCCTCCCCCTGTGGTTGCCTAAATCCTTGAGCCCT GGCTCTGGGCGGGAGCTGCAGAGACTCTCCTATTTGGGGGCTTTCTTTAGCTTCTCCGTC TTTGCCGAAGATGACGCTAAAGTGGTTGAAAAATATTTCTCAGGGCCTGCCATTACCCTG GAAAACACGCGTGTGGTGAGCCAGTCGCTGCAGCATTACTTGGAGCTGGGAAGGCAAGAG CTTTTCAAGATTCTGCATAGTATTTTGTTAAATGGTGAAACCCGCGAGGCTGCTCTTGGT TACATGGCGGCTGTCGTCAACGCCAATATGAAGAAAGCACAGATGCAGACAGATGATAGA CTGGTATCTACAGATGGATTTATGCTGAATTTCCTTTGGGTGCTGCAGCAGCTAAGTACC AAGATCAAGCTAGAGACAGTCGACCCCACTTATATATTCCACCCAAGGTGTCGGATTACT CTTCCCAACGATGAGACGAGAGTAAATGCGACGATGGAGGATGTGAATGACTGGCTGACT GAACTTTATGGAGATCAGCCTCCATATTCTGAGCCGAAATTCCCTACAGAATGCTTCTTT CTCACCCTGCACGCCCACCACCTCTCTATTCTGCCGAGCTGCCGTCGCTATATCCGCAGA CTCCGGGCCATCCGGGAGCTCAATAGAACTGTGGAAGATTTGAAAAATAATGAAAGCCAG TGGAAAGATTCCCCACTGGCAACTAGACACCGTGAAATGCTGAAGCGCTGCAAGACTCAG CTTAAGAAACTGGTACGATGCAAGGCCTGTGCCGACGCTGGCTTACTTGACGAGAGCTTC CTGAGAAGATGTCTGAATTTTTACGGGCTTCTCATTCAGCTGCTGCTCCGCATCCTGGAC CCCACCCCCACCATGTAACACTGCCTTTAAATTCCGATGTCCCCAAGGTATTTGCAGCAT TGCCTGAGTTTTATGTAGAAGATGTTGCTGAATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-134, - strand, RNAz p=0.699455 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-134, - strand, RNAz p=0.699455 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 15-134, gnl|bosTau2|chr16 (31249803-31249922) | |
| 15-134, gnl|canFam2|chr5 (66299376-66299724) | |
| 15-134, gnl|danRer3|chrUn (158786729-158787083) | |
| 15-134, gnl|dasNov1|scaffold_14760 (9182-8840) | |
| 15-134, gnl|fr1|chrUn (203450062-203450374) | |
| 15-134, gnl|galGal2|chr21 (3472054-3472376) | |
| 15-134, gnl|hg17|chr1 (10124808-10125150) | |
| 15-134, gnl|Hg17|chr1 (10124820-10124939) | |
| 15-134, gnl|loxAfr1|scaffold_21067 (15095-14753) | |
| 15-134, gnl|mm7|chr4 (148350136-148349809) | |
| 15-134, gnl|Mm7|chr4 (148350122-148350003) | |
| 15-134, gnl|monDom2|scaffold_177 (574497-574145) | |
| 15-134, gnl|oryCun1|scaffold_200188 (5486-5153) | |
| 15-134, gnl|panTro1|chr1 (10323997-10324339) | |
| 15-134, gnl|rheMac2|chr1 (13214428-13214769) | |
| 15-134, gnl|rn3|chr5 (166450584-166450262) | |
| 15-134, gnl|tetNig1|chr9 (2495033-2494700) | |
| 15-134, gnl|xenTro1|scaffold_745 (255707-256133) | |
| 346-550, gnl|bosTau2|chr16 (31252234-31252438) | |
| 346-550, gnl|canFam2|chr5 (66301938-66302185) | |
| 346-550, gnl|danRer3|chrUn (158788754-158788993) | |
| 346-550, gnl|dasNov1|scaffold_14760 (6341-6088) | |
| 346-550, gnl|echTel1|scaffold_318664 (88991-89224) | |
| 346-550, gnl|fr1|chrUn (203450700-203450956) | |
| 346-550, gnl|galGal2|chr21 (3473426-3473678) | |
| 346-550, gnl|hg17|chr1 (10129291-10129544) | |
| 346-550, gnl|Hg17|chr1 (10129309-10129513) | |
| 346-550, gnl|loxAfr1|scaffold_21067 (12334-12081) | |
| 346-550, gnl|mm7|chr4 (148347374-148347140) | |
| 346-550, gnl|Mm7|chr4 (148347368-148347164) | |
| 346-550, gnl|monDom2|scaffold_177 (572965-572711) | |
| 346-550, gnl|oryCun1|scaffold_200188 (2452-2214) | |
| 346-550, gnl|panTro1|chr1 (10328465-10328718) | |
| 346-550, gnl|rheMac2|chr1 (13218836-13219089) | |
| 346-550, gnl|rn3|chr5 (166447996-166447765) | |
| 346-550, gnl|tetNig1|chr9 (2494319-2494104) | |
| 346-550, gnl|xenTro1|scaffold_745 (261771-262034) | |
| 785-902, gnl|bosTau2|chr16 (31261905-31262022) | |
| 785-902, gnl|Hg17|chr1 (10141285-10141402) | |
| 785-902, gnl|Mm7|chr4 (148341129-148341012) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-134, gnl|bosTau2|chr16 (31249803-31249922) | |
| 15-134, gnl|canFam2|chr5 (66299376-66299724) | |
| 15-134, gnl|danRer3|chrUn (158786729-158787083) | |
| 15-134, gnl|dasNov1|scaffold_14760 (9182-8840) | |
| 15-134, gnl|fr1|chrUn (203450062-203450374) | |
| 15-134, gnl|galGal2|chr21 (3472054-3472376) | |
| 15-134, gnl|hg17|chr1 (10124808-10125150) | |
| 15-134, gnl|Hg17|chr1 (10124820-10124939) | |
| 15-134, gnl|loxAfr1|scaffold_21067 (15095-14753) | |
| 15-134, gnl|mm7|chr4 (148350136-148349809) | |
| 15-134, gnl|Mm7|chr4 (148350122-148350003) | |
| 15-134, gnl|monDom2|scaffold_177 (574497-574145) | |
| 15-134, gnl|oryCun1|scaffold_200188 (5486-5153) | |
| 15-134, gnl|panTro1|chr1 (10323997-10324339) | |
| 15-134, gnl|rheMac2|chr1 (13214428-13214769) | |
| 15-134, gnl|rn3|chr5 (166450584-166450262) | |
| 15-134, gnl|tetNig1|chr9 (2495033-2494700) | |
| 15-134, gnl|xenTro1|scaffold_745 (255707-256133) | |
| 346-550, gnl|bosTau2|chr16 (31252234-31252438) | |
| 346-550, gnl|canFam2|chr5 (66301938-66302185) | |
| 346-550, gnl|danRer3|chrUn (158788754-158788993) | |
| 346-550, gnl|dasNov1|scaffold_14760 (6341-6088) | |
| 346-550, gnl|echTel1|scaffold_318664 (88991-89224) | |
| 346-550, gnl|fr1|chrUn (203450700-203450956) | |
| 346-550, gnl|galGal2|chr21 (3473426-3473678) | |
| 346-550, gnl|hg17|chr1 (10129291-10129544) | |
| 346-550, gnl|Hg17|chr1 (10129309-10129513) | |
| 346-550, gnl|loxAfr1|scaffold_21067 (12334-12081) | |
| 346-550, gnl|mm7|chr4 (148347374-148347140) | |
| 346-550, gnl|Mm7|chr4 (148347368-148347164) | |
| 346-550, gnl|monDom2|scaffold_177 (572965-572711) | |
| 346-550, gnl|oryCun1|scaffold_200188 (2452-2214) | |
| 346-550, gnl|panTro1|chr1 (10328465-10328718) | |
| 346-550, gnl|rheMac2|chr1 (13218836-13219089) | |
| 346-550, gnl|rn3|chr5 (166447996-166447765) | |
| 346-550, gnl|tetNig1|chr9 (2494319-2494104) | |
| 346-550, gnl|xenTro1|scaffold_745 (261771-262034) | |
| 785-902, gnl|bosTau2|chr16 (31261905-31262022) | |
| 785-902, gnl|Hg17|chr1 (10141285-10141402) | |
| 785-902, gnl|Mm7|chr4 (148341129-148341012) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.140746) |