Ss1.1-Pig4-TMW8005D01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAACCGCGGGCCATGGCGGAGACGGAAGCGAGGTTGCTGCGGCAGTGCCCGCTGCTTCT GCCCCAGAACCGTGCGAAAACCGTGTATGAAGGATTCATTTCGGCTCAGGGAAGAGATTT CCACCTTAAAATATTGCTGCCCAAAGATTTACAATTGAGAAATGCAAGATTGCTGTGTAG TTGGCAGCTGAGAACAATACTTAATGGGTATCATCAAGTAGTACAACAGAGAATGCAACA CTCTCCTGATCTAATGAGCTTCATGATGGAATTGAAGATGGTTTTGGAAGCTGCTTTAAA GAATAAACAAGAGCTATATGTACCACCTCCTCCTCCCCAGTTCTACTCAAGTGTTGTTGA AGAGATAGGAACTCTTGGTTGGGATAAGCTTGTGCATGTGGATACTTGCTTTAGTACCAT CAAGTTAAAAGCTGAAGATGCTTCTGGTAGAGAGCATCTAATCACTGTCAAGTTGAAGGC AAAGTATCCTGCAGAACCACCAGATTGTATTGTGGATTTTCCTGTTTCATTTTCTGTTTC CTGGACACCACAGAGCTCCTTAATAAGCATTCATAGCCAGTTTTTGGAAGCATTAGAATC ACTGAAGGCATTCTGGGATGTTATGGATGAAATCGATGGGAAGACTTGGGTACTTGAGCC AGAAAAACCTACACGGAGTGCTACAGCACGCAGAATTGCATTAGGGAATAATAGTTCAAT AAATATAGAGGTAGATCCCAGGCATCCTACTATGCTTCCTGAGTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAACCGCGGGCCATGGCGGAGACGGAAGCGAGGTTGCTGCGGCAGTGCCCGCTGCTTCT GCCCCAGAACCGTGCGAAAACCGTGTATGAAGGATTCATTTCGGCTCAGGGAAGAGATTT CCACCTTAAAATATTGCTGCCCAAAGATTTACAATTGAGAAATGCAAGATTGCTGTGTAG TTGGCAGCTGAGAACAATACTTAATGGGTATCATCAAGTAGTACAACAGAGAATGCAACA CTCTCCTGATCTAATGAGCTTCATGATGGAATTGAAGATGGTTTTGGAAGCTGCTTTAAA GAATAAACAAGAGCTATATGTACCACCTCCTCCTCCCCAGTTCTACTCAAGTGTTGTTGA AGAGATAGGAACTCTTGGTTGGGATAAGCTTGTGCATGTGGATACTTGCTTTAGTACCAT CAAGTTAAAAGCTGAAGATGCTTCTGGTAGAGAGCATCTAATCACTGTCAAGTTGAAGGC AAAGTATCCTGCAGAACCACCAGATTGTATTGTGGATTTTCCTGTTTCATTTTCTGTTTC CTGGACACCACAGAGCTCCTTAATAAGCATTCATAGCCAGTTTTTGGAAGCATTAGAATC ACTGAAGGCATTCTGGGATGTTATGGATGAAATCGATGGGAAGACTTGGGTACTTGAGCC AGAAAAACCTACACGGAGTGCTACAGCACGCAGAATTGCATTAGGGAATAATAGTTCAAT AAATATAGAGGTAGATCCCAGGCATCCTACTATGCTTCCTGAGTGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 270-389, - strand, RNAz p=0.59125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 270-389, - strand, RNAz p=0.59125 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr11 (27273134-27273025) | |
| 1-110, gnl|canFam2|chr10 (61779946-61780080) | |
| 1-110, gnl|dasNov1|scaffold_11574 (2839-2731) | |
| 1-110, gnl|hg17|chr2 (58379979-58380113) | |
| 1-110, gnl|Hg17|chr2 (58380112-58380003) | |
| 1-110, gnl|loxAfr1|scaffold_4340 (8777-8645) | |
| 1-110, gnl|mm7|chr11 (26339343-26339219) | |
| 1-110, gnl|Mm7|chr11 (26339214-26339317) | |
| 1-110, gnl|monDom2|scaffold_1 (22242231-22242346) | |
| 1-110, gnl|oryCun1|scaffold_172176 (1132-1003) | |
| 1-110, gnl|panTro1|chr12 (60513072-60513206) | |
| 1-110, gnl|rheMac2|chr13 (58456793-58456927) | |
| 1-110, gnl|rn3|chr14 (107230783-107230659) | |
| 111-569, gnl|bosTau2|chr15 (34745508-34745952) | |
| 286-414, gnl|bosTau2|chr11 (27245165-27245037) | |
| 286-414, gnl|canFam2|chr10 (61753663-61753829) | |
| 286-414, gnl|echTel1|scaffold_318141 (155995-156154) | |
| 286-414, gnl|galGal2|chr3 (1488125-1487965) | |
| 286-414, gnl|hg17|chr2 (58360679-58360842) | |
| 286-414, gnl|Hg17|chr2 (58360829-58360703) | |
| 286-414, gnl|loxAfr1|scaffold_94601 (4443-4280) | |
| 286-414, gnl|mm7|chr11 (26359707-26359543) | |
| 286-414, gnl|Mm7|chr11 (26359553-26359681) | |
| 286-414, gnl|monDom2|scaffold_1 (22201389-22201537) | |
| 286-414, gnl|oryCun1|scaffold_171633 (5369-5505) | |
| 286-414, gnl|panTro1|chr12 (60493784-60493947) | |
| 286-414, gnl|rheMac2|chr13 (58437700-58437863) | |
| 286-414, gnl|rn3|chr14 (107246353-107246189) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr11 (27273134-27273025) | |
| 1-110, gnl|canFam2|chr10 (61779946-61780080) | |
| 1-110, gnl|dasNov1|scaffold_11574 (2839-2731) | |
| 1-110, gnl|hg17|chr2 (58379979-58380113) | |
| 1-110, gnl|Hg17|chr2 (58380112-58380003) | |
| 1-110, gnl|loxAfr1|scaffold_4340 (8777-8645) | |
| 1-110, gnl|mm7|chr11 (26339343-26339219) | |
| 1-110, gnl|Mm7|chr11 (26339214-26339317) | |
| 1-110, gnl|monDom2|scaffold_1 (22242231-22242346) | |
| 1-110, gnl|oryCun1|scaffold_172176 (1132-1003) | |
| 1-110, gnl|panTro1|chr12 (60513072-60513206) | |
| 1-110, gnl|rheMac2|chr13 (58456793-58456927) | |
| 1-110, gnl|rn3|chr14 (107230783-107230659) | |
| 111-569, gnl|bosTau2|chr15 (34745508-34745952) | |
| 286-414, gnl|bosTau2|chr11 (27245165-27245037) | |
| 286-414, gnl|canFam2|chr10 (61753663-61753829) | |
| 286-414, gnl|echTel1|scaffold_318141 (155995-156154) | |
| 286-414, gnl|galGal2|chr3 (1488125-1487965) | |
| 286-414, gnl|hg17|chr2 (58360679-58360842) | |
| 286-414, gnl|Hg17|chr2 (58360829-58360703) | |
| 286-414, gnl|loxAfr1|scaffold_94601 (4443-4280) | |
| 286-414, gnl|mm7|chr11 (26359707-26359543) | |
| 286-414, gnl|Mm7|chr11 (26359553-26359681) | |
| 286-414, gnl|monDom2|scaffold_1 (22201389-22201537) | |
| 286-414, gnl|oryCun1|scaffold_171633 (5369-5505) | |
| 286-414, gnl|panTro1|chr12 (60493784-60493947) | |
| 286-414, gnl|rheMac2|chr13 (58437700-58437863) | |
| 286-414, gnl|rn3|chr14 (107246353-107246189) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |