Non-Coding RNA Search

Ss1.1-Pig4-TMW8005E05.3

Sequence:


               
               TAATGTAGGTGGATAGCTATGCCACAGCATGCACAAATTGCACATTTTGTTGGACTTTCG
TTATAAAATATTTAATTTGAAAAATATAATTTATGCCAAAAAAGTATACCTTGTAATTTT
GCCACTAAATAGGTTGATTTAGCACAAAATGCAAAGTCTTGGGGCAGAAGGGGGGAGATA
AAAAATTTCATAGATAATAGTTGGAAAATGTTCCATTATTGGCCTGTCAGAAACCCTAAA
GCTGCATTGTTAGACAAATGGTGTAAATTAGTTTTGAAAAAGTGGTAAGGGGTTGTGAAA
AAAATCTCAGACTTAATGCTCCCTAACCACATAATTTTCTTATTTTTTATTTAGTAATAC
GCTGCTACGTATTTGGAGGTTCTGGTGTTTGTAGGTCACTGAACAGACATTGAAATCTGA
TTTATATTGTATAACTGTAACATAGAAAGAAAAAGTATTTATATATTTTCCGTAAGAATA
TTTCATTGAGTTGTGTATAATTTAAATAAGGTTTGTCCCCTAATGATTTTGCTCACCTTG
ATTTTTTTTTTTTTTCGTGGTTTTCTTGTTTTTGTATAATGTGTACAGTTTATGTCAAGG
GCATTAAAAGCCTCCTGAAACATAACCTTATCAAAGGGATACATTCTTAATAAAATGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATGTAGGTGGATAGCTATGCCACAGCATGCACAAATTGCACATTTTGTTGGACTTTCG
TTATAAAATATTTAATTTGAAAAATATAATTTATGCCAAAAAAGTATACCTTGTAATTTT
GCCACTAAATAGGTTGATTTAGCACAAAATGCAAAGTCTTGGGGCAGAAGGGGGGAGATA
AAAAATTTCATAGATAATAGTTGGAAAATGTTCCATTATTGGCCTGTCAGAAACCCTAAA
GCTGCATTGTTAGACAAATGGTGTAAATTAGTTTTGAAAAAGTGGTAAGGGGTTGTGAAA
AAAATCTCAGACTTAATGCTCCCTAACCACATAATTTTCTTATTTTTTATTTAGTAATAC
GCTGCTACGTATTTGGAGGTTCTGGTGTTTGTAGGTCACTGAACAGACATTGAAATCTGA
TTTATATTGTATAACTGTAACATAGAAAGAAAAAGTATTTATATATTTTCCGTAAGAATA
TTTCATTGAGTTGTGTATAATTTAAATAAGGTTTGTCCCCTAATGATTTTGCTCACCTTG
ATTTTTTTTTTTTTTCGTGGTTTTCTTGTTTTTGTATAATGTGTACAGTTTATGTCAAGG
GCATTAAAAGCCTCCTGAAACATAACCTTATCAAAGGGATACATTCTTAATAAAATGTAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               303-421, - strand, RNAz p=0.903422
               

               
               542-660, + strand, RNAz p=0.811546

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-421, - strand, RNAz p=0.903422
               

               
               542-660, + strand, RNAz p=0.811546

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr20 (20970550-20969896)
               

               
               1-660, gnl|Hg17|chr5 (38974437-38973793)
               

               
               1-660, gnl|Mm7|chr15 (6626477-6627134)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr20 (20970550-20969896)
               

               
               1-660, gnl|Hg17|chr5 (38974437-38973793)
               

               
               1-660, gnl|Mm7|chr15 (6626477-6627134)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	303-421, - strand, RNAz p=0.903422
	542-660, + strand, RNAz p=0.811546

	1-660, gnl\|bosTau2\|chr20 (20970550-20969896)
	1-660, gnl\|Hg17\|chr5 (38974437-38973793)
	1-660, gnl\|Mm7\|chr15 (6626477-6627134)

	vin (0.332557)
	mgm (0.180343)
	fbs (0.175346)
	fco (0.157208)
	spl (0.143184)
	thg (0.126791)
	tra (0.123092)
	ecc (0.115035)
	spc (0.113366)