Non-Coding RNA Search

Ss1.1-Pig4-TMW8005F16.3

Sequence:


               
               TCCCTCCCATCTCTTGAGAAATAAGTGCATATGGTTTATAACTCTTCTTTGCTAATGGGA
AGCTTTTTTTTGTCTTAATTGCATTTAAGGGTATTTTGTACCAGGCCTCAGCCTGGGTCA
GAGTGGTGTAAGAAGGCTTGTGATATGATGGCAGAGGAAGAAGTCTGGGGCCTAATGATA
TAACCATCCTGCCCCCTTCTGAGTCAGCAGAAGAGCAGCAGGCCCCTTTTCTGGGTGTCT
CTGTGCTCTGAACAGGAGCGGGAATCCACTCAAGTTTTCACCAGCCTCTTCTGAAGACAG
AAGGCCTTCGAGGGAGAAGGAAGCCTAGTCTTGTACTCAATACTTCTATAGTATTGTGGG
TATAGAAGTAAAAACTACCTCTGTTGAGACTTTGCCCAGGGTCCTGTGCCTGGGTGGGGG
TACAGGCAGCCTGGCTCCAGCCTTGCCCTCACCTCAATCCTCTTTCCAGCAGGCGAGACG
TAACAGGTGCTGAACCCCACATCAACCTGGAGACGCTCTGTCACCAAGCTGGTTCTCATC
ACCTATGCTTCCTCTTACTTAAAATGAATAAACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTCCCATCTCTTGAGAAATAAGTGCATATGGTTTATAACTCTTCTTTGCTAATGGGA
AGCTTTTTTTTGTCTTAATTGCATTTAAGGGTATTTTGTACCAGGCCTCAGCCTGGGTCA
GAGTGGTGTAAGAAGGCTTGTGATATGATGGCAGAGGAAGAAGTCTGGGGCCTAATGATA
TAACCATCCTGCCCCCTTCTGAGTCAGCAGAAGAGCAGCAGGCCCCTTTTCTGGGTGTCT
CTGTGCTCTGAACAGGAGCGGGAATCCACTCAAGTTTTCACCAGCCTCTTCTGAAGACAG
AAGGCCTTCGAGGGAGAAGGAAGCCTAGTCTTGTACTCAATACTTCTATAGTATTGTGGG
TATAGAAGTAAAAACTACCTCTGTTGAGACTTTGCCCAGGGTCCTGTGCCTGGGTGGGGG
TACAGGCAGCCTGGCTCCAGCCTTGCCCTCACCTCAATCCTCTTTCCAGCAGGCGAGACG
TAACAGGTGCTGAACCCCACATCAACCTGGAGACGCTCTGTCACCAAGCTGGTTCTCATC
ACCTATGCTTCCTCTTACTTAAAATGAATAAACACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-237, + strand, RNAz p=0.992132
               

               
               331-480, + strand, RNAz p=0.981038

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-237, + strand, RNAz p=0.992132
               

               
               331-480, + strand, RNAz p=0.981038

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_138991, +
               

               
               3' of NM_138991, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138991, +
               

               
               3' of NM_138991, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-250, gnl|bosTau2|chr1 (93200801-93201048)
               

               
               1-250, gnl|Hg17|chr21 (41569758-41570000)
               


               
               267-575, gnl|bosTau2|chr1 (93201323-93201635)
               

               
               267-575, gnl|Hg17|chr21 (41570035-41570368)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-250, gnl|bosTau2|chr1 (93200801-93201048)
               

               
               1-250, gnl|Hg17|chr21 (41569758-41570000)
               


               
               267-575, gnl|bosTau2|chr1 (93201323-93201635)
               

               
               267-575, gnl|Hg17|chr21 (41570035-41570368)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	40-237, + strand, RNAz p=0.992132
	331-480, + strand, RNAz p=0.981038

	1-250, gnl\|bosTau2\|chr1 (93200801-93201048)
	1-250, gnl\|Hg17\|chr21 (41569758-41570000)

	267-575, gnl\|bosTau2\|chr1 (93201323-93201635)
	267-575, gnl\|Hg17\|chr21 (41570035-41570368)