Ss1.1-Pig4-TMW8005H04.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CCAGCCGCCTGCCGTGCCTGCCCGCCCGTGGTGCGAGGGAGCGAGCGCCGGTCCGTGGCC GCGCCTTCCGCTCCCGGCCCGAGCGAGCCCGCCGCCGGTTCGTTTCACCGCCGCCGCCGC CGCCGGGCCCGGCCACAGCCTGCAGCGGAACCCTCGAGAGTCAGCGCCATGGCGGAGCAG ACCTACTCGTGGGCCTATTCCCTGGTGGATTCCAGTCAGGTGTCTACATTTCTGATTTCC ATTCTGCTTATAGTCTATGGTAGTTTCAGGTCCCTTAATATGGACTTTGAAAATCAAGAT AAGGAGAAAGACAATAACAGTTCTTCTGGGTCTTTCAATGGCAACAGCACCAATAATAGT ATCCAAACTATTGACTCTACCCAGGCCCTGTTCCTTCCAATTGGAGCATCTGTCTCTCTC CTAGTAATGTTCTTCTTCTTTGACTCAGTTCAAGTAGTTTTTACAATATGTACAGCAGTT CTTGCAACAATAGCTTTTGCTTTTCTTCTTCTCCCGATGTGCCAGTATTTAACAAGACCC TGTTCACCTCAGAACAAGATTTCCTTTGGTTGCTGTGGGCGTTTCACTGCTGCTGAGCTA CTATCGTTCTCTTTGTCTGTCATGCTCGTCCTCATATGGGTTCTCACTGGCCATTGGCTT CTCATGGATGCCTTGGCCATGGGTCTCTGTGTCGCCATGATCGCCTTCGTCCGTCTGCCC AGCCTCAAGGTCTCCTGCCTGCTGCTCTCAGGGCTTCTAATCTACGATGTCTTTTGGGTG TTCTTCTCCGCCTACATCTTCAATAGCAACGTCATGGTGAAGGTGGCCACACAACCGGCT GACAATCCCCTTGACGTTCTGTCCCGGAAGCTCCACTTGGGGCCCAATGTTGGGCGCGAT GTTCCTCGCCTATCTCTGCCTGGAAAACTGGTCTTCCCCAGCTCCACTGGCAGTCACTTC TCCATGTTGGGCATTGGAGACATCGTGATGCCTGGACTCCTGTTGTGTTTTGTCCTTCGT TACGACAACTACAAAAAGCAAGCCAACGGTGACTCCTGCAGTGCCTCTGGGCCCGCCAAC ATCTCTGGACGCATGCAGAAGGTTTCCTACTTTCACTGCACCCTCATTGGCTACTTTGTA GGTCTGCTCACTGCTACTGTGGCATCTCGAATTCACCGAGCAGCCCAGCCCGCCCTTCTC TATTTGGTGCCATTTACCTTATTGCCACTCCTCACAATGGCCTATTTAAAGGGTGACCTA CGGCGGATGTGGTCTGAGCCTTTCCACTCCAAGTCCAGCAGCTCCCGATTCCTAGAAGTA TGATGGATCACAGAGAGTGACCAGATGGCTTCTAAGTCCTTTTCTGTCAACTCGTGGTTT TGTTTCCTCTTAGAGCTGGCCTGGTACTTGGAGATGTACCTGTCTAAGGACTGCTGTGTG ACCGGATTTTGCATTTGCAGGAGCGAGGTGCTGGAGCCCTGTGTGGTTCTTTCTCTTCCC GCCGTTGGAGTGGTGGAGCCCCTCCTGAAAGGACAGGCCCTCCCTAGCGCTCCTTCCTCC CCCATTTTTATGGATCTGCACCAGACTGTTACCTCTGGGGGATGGAGATGTGACTGTTGA AACTGACACCGGCAAGGAGTCGTTCTGTACCTTTGAACACTAAAAGGATGAGAAACATTA GCAAACTGGTTTCTTCAGTGAACCCTCAAGAACTTTGGGACCAGTTTCCTATGGGGGACT CAGTTTCAGAGAACTGAGACAGAAGCTCTTCTGTCGTTATATTCTTTCCTTTTTTTGGAT TTATTAAATATTTTCTGTGGTGTGAAGTGACTTATTAAATCCACAGACATTGAGTGACTT CTTACAACATACACACAAGAATCTGTTGTAATAAGCTCATGTCCACCCGGATATGTTGGC AGTGAACAGGGGCACGGTTTTTATACATACATACCTACACACACATGCACATAGATATAT ATGAACAAACGAAAATTAAAACCT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CCAGCCGCCTGCCGTGCCTGCCCGCCCGTGGTGCGAGGGAGCGAGCGCCGGTCCGTGGCC GCGCCTTCCGCTCCCGGCCCGAGCGAGCCCGCCGCCGGTTCGTTTCACCGCCGCCGCCGC CGCCGGGCCCGGCCACAGCCTGCAGCGGAACCCTCGAGAGTCAGCGCCATGGCGGAGCAG ACCTACTCGTGGGCCTATTCCCTGGTGGATTCCAGTCAGGTGTCTACATTTCTGATTTCC ATTCTGCTTATAGTCTATGGTAGTTTCAGGTCCCTTAATATGGACTTTGAAAATCAAGAT AAGGAGAAAGACAATAACAGTTCTTCTGGGTCTTTCAATGGCAACAGCACCAATAATAGT ATCCAAACTATTGACTCTACCCAGGCCCTGTTCCTTCCAATTGGAGCATCTGTCTCTCTC CTAGTAATGTTCTTCTTCTTTGACTCAGTTCAAGTAGTTTTTACAATATGTACAGCAGTT CTTGCAACAATAGCTTTTGCTTTTCTTCTTCTCCCGATGTGCCAGTATTTAACAAGACCC TGTTCACCTCAGAACAAGATTTCCTTTGGTTGCTGTGGGCGTTTCACTGCTGCTGAGCTA CTATCGTTCTCTTTGTCTGTCATGCTCGTCCTCATATGGGTTCTCACTGGCCATTGGCTT CTCATGGATGCCTTGGCCATGGGTCTCTGTGTCGCCATGATCGCCTTCGTCCGTCTGCCC AGCCTCAAGGTCTCCTGCCTGCTGCTCTCAGGGCTTCTAATCTACGATGTCTTTTGGGTG TTCTTCTCCGCCTACATCTTCAATAGCAACGTCATGGTGAAGGTGGCCACACAACCGGCT GACAATCCCCTTGACGTTCTGTCCCGGAAGCTCCACTTGGGGCCCAATGTTGGGCGCGAT GTTCCTCGCCTATCTCTGCCTGGAAAACTGGTCTTCCCCAGCTCCACTGGCAGTCACTTC TCCATGTTGGGCATTGGAGACATCGTGATGCCTGGACTCCTGTTGTGTTTTGTCCTTCGT TACGACAACTACAAAAAGCAAGCCAACGGTGACTCCTGCAGTGCCTCTGGGCCCGCCAAC ATCTCTGGACGCATGCAGAAGGTTTCCTACTTTCACTGCACCCTCATTGGCTACTTTGTA GGTCTGCTCACTGCTACTGTGGCATCTCGAATTCACCGAGCAGCCCAGCCCGCCCTTCTC TATTTGGTGCCATTTACCTTATTGCCACTCCTCACAATGGCCTATTTAAAGGGTGACCTA CGGCGGATGTGGTCTGAGCCTTTCCACTCCAAGTCCAGCAGCTCCCGATTCCTAGAAGTA TGATGGATCACAGAGAGTGACCAGATGGCTTCTAAGTCCTTTTCTGTCAACTCGTGGTTT TGTTTCCTCTTAGAGCTGGCCTGGTACTTGGAGATGTACCTGTCTAAGGACTGCTGTGTG ACCGGATTTTGCATTTGCAGGAGCGAGGTGCTGGAGCCCTGTGTGGTTCTTTCTCTTCCC GCCGTTGGAGTGGTGGAGCCCCTCCTGAAAGGACAGGCCCTCCCTAGCGCTCCTTCCTCC CCCATTTTTATGGATCTGCACCAGACTGTTACCTCTGGGGGATGGAGATGTGACTGTTGA AACTGACACCGGCAAGGAGTCGTTCTGTACCTTTGAACACTAAAAGGATGAGAAACATTA GCAAACTGGTTTCTTCAGTGAACCCTCAAGAACTTTGGGACCAGTTTCCTATGGGGGACT CAGTTTCAGAGAACTGAGACAGAAGCTCTTCTGTCGTTATATTCTTTCCTTTTTTTGGAT TTATTAAATATTTTCTGTGGTGTGAAGTGACTTATTAAATCCACAGACATTGAGTGACTT CTTACAACATACACACAAGAATCTGTTGTAATAAGCTCATGTCCACCCGGATATGTTGGC AGTGAACAGGGGCACGGTTTTTATACATACATACCTACACACACATGCACATAGATATAT ATGAACAAACGAAAATTAAAACCT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1026-1920, - strand, RNAz p=0.99456 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1026-1920, - strand, RNAz p=0.99456 |
Aligned organism(s): 87 entry(ies) | More info |
Aligned organism(s): 87 entry(ies) | Help | Less info |
359-478, gnl|bosTau2|chr17 (36246218-36246337) | |
359-478, gnl|canFam2|chr26 (19663011-19662899) | |
359-478, gnl|canFam2|chr26 (19662877-19663042) | |
359-478, gnl|danRer3|chrNA (165868885-165868998) | |
359-478, gnl|danRer3|chrNA (165869009-165868878) | |
359-478, gnl|dasNov1|scaffold_11795 (44537-44425) | |
359-478, gnl|dasNov1|scaffold_11795 (44403-44570) | |
359-478, gnl|echTel1|scaffold_280627 (39039-39151) | |
359-478, gnl|echTel1|scaffold_280627 (39174-39006) | |
359-478, gnl|fr1|chrUn (107480454-107480599) | |
359-478, gnl|galGal2|chr15 (9089860-9089707) | |
359-478, gnl|hg17|chr12 (119684975-119685143) | |
359-478, gnl|Hg17|chr12 (119685116-119684997) | |
359-478, gnl|hg17|chr18 (67043978-67044091) | |
359-478, gnl|loxAfr1|scaffold_25004 (11401-11289) | |
359-478, gnl|loxAfr1|scaffold_25004 (11267-11435) | |
359-478, gnl|mm7|chr5 (114303060-114303172) | |
359-478, gnl|mm7|chr5 (114303182-114303029) | |
359-478, gnl|Mm7|chr5 (114303054-114303173) | |
359-478, gnl|monDom2|scaffold_145 (1636197-1636028) | |
359-478, gnl|oryCun1|scaffold_181350 (5886-5774) | |
359-478, gnl|oryCun1|scaffold_181350 (5748-5917) | |
359-478, gnl|panTro1|chr10 (122750590-122750758) | |
359-478, gnl|panTro1|chr17 (64022360-64022473) | |
359-478, gnl|rheMac2|chr11 (121826255-121826423) | |
359-478, gnl|rheMac2|chr18 (64884599-64884486) | |
359-478, gnl|rn3|chr12 (42666455-42666594) | |
359-478, gnl|rn3|chr5 (88071869-88071980) | |
359-478, gnl|tetNig1|chr4 (1295734-1295935) | |
359-478, gnl|tetNig1|chr4 (1295853-1295722) | |
359-478, gnl|xenTro1|scaffold_9 (5035808-5035696) | |
359-478, gnl|xenTro1|scaffold_9 (5035662-5035827) | |
555-670, gnl|bosTau2|chr17 (36248120-36248235) | |
555-670, gnl|canFam2|chr26 (19661139-19661027) | |
555-670, gnl|canFam2|chr26 (19661018-19661150) | |
555-670, gnl|danRer3|chrNA (165872077-165872189) | |
555-670, gnl|danRer3|chrNA (165872195-165872070) | |
555-670, gnl|dasNov1|scaffold_11795 (42815-42703) | |
555-670, gnl|dasNov1|scaffold_11795 (42693-42829) | |
555-670, gnl|echTel1|scaffold_280627 (41003-41115) | |
555-670, gnl|echTel1|scaffold_280627 (41121-40989) | |
555-670, gnl|fr1|chrUn (107479431-107479319) | |
555-670, gnl|fr1|chrUn (107479313-107479434) | |
555-670, gnl|galGal2|chr15 (9093381-9093493) | |
555-670, gnl|galGal2|chr15 (9093499-9093368) | |
555-670, gnl|hg17|chr12 (119683169-119683305) | |
555-670, gnl|Hg17|chr12 (119683293-119683178) | |
555-670, gnl|hg17|chr18 (67044173-67044285) | |
555-670, gnl|loxAfr1|scaffold_25004 (9637-9525) | |
555-670, gnl|loxAfr1|scaffold_25004 (9515-9651) | |
555-670, gnl|mm7|chr5 (114305687-114305799) | |
555-670, gnl|mm7|chr5 (114305808-114305674) | |
555-670, gnl|Mm7|chr5 (114305683-114305798) | |
555-670, gnl|monDom2|scaffold_145 (1642003-1641867) | |
555-670, gnl|oryCun1|scaffold_181350 (4213-4101) | |
555-670, gnl|oryCun1|scaffold_181350 (4091-4227) | |
555-670, gnl|panTro1|chr10 (122748769-122748905) | |
555-670, gnl|panTro1|chr17 (64022555-64022667) | |
555-670, gnl|rheMac2|chr11 (121824423-121824559) | |
555-670, gnl|rheMac2|chr18 (64884404-64884292) | |
555-670, gnl|rn3|chr12 (42664730-42664864) | |
555-670, gnl|rn3|chr5 (88072059-88072152) | |
555-670, gnl|tetNig1|chr4 (1296584-1296696) | |
555-670, gnl|tetNig1|chr4 (1296698-1296581) | |
555-670, gnl|xenTro1|scaffold_9 (5035537-5035435) | |
555-670, gnl|xenTro1|scaffold_9 (5034871-5034999) | |
938-1143, gnl|bosTau2|chr17 (36256040-36256245) | |
938-1143, gnl|canFam2|chr26 (19650196-19650355) | |
938-1143, gnl|danRer3|chrNA (165877195-165877030) | |
938-1143, gnl|dasNov1|scaffold_11795 (37561-37720) | |
938-1143, gnl|echTel1|scaffold_274437 (5302-5138) | |
938-1143, gnl|fr1|chrUn (107477773-107477925) | |
938-1143, gnl|galGal2|chr15 (9100770-9100611) | |
938-1143, gnl|hg17|chr12 (119667901-119668074) | |
938-1143, gnl|Hg17|chr12 (119668120-119667915) | |
938-1143, gnl|loxAfr1|scaffold_6957 (43285-43458) | |
938-1143, gnl|mm7|chr5 (114316102-114315928) | |
938-1143, gnl|Mm7|chr5 (114315880-114316085) | |
938-1143, gnl|monDom2|scaffold_145 (1654604-1654445) | |
938-1143, gnl|panTro1|chr10 (122733448-122733621) | |
938-1143, gnl|rheMac2|chr11 (121807974-121808147) | |
938-1143, gnl|rn3|chr12 (42654024-42654198) | |
938-1143, gnl|tetNig1|chr4 (1298328-1298165) | |
938-1143, gnl|xenTro1|scaffold_9 (5032211-5032358) | |
1250-2003, gnl|bosTau2|chr17 (36258260-36259023) | |
1250-2003, gnl|Hg17|chr12 (119665595-119664800) | |
1250-2003, gnl|Mm7|chr5 (114317957-114318736) |
Aligned organism(s): 87 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
359-478, gnl|bosTau2|chr17 (36246218-36246337) | |
359-478, gnl|canFam2|chr26 (19663011-19662899) | |
359-478, gnl|canFam2|chr26 (19662877-19663042) | |
359-478, gnl|danRer3|chrNA (165868885-165868998) | |
359-478, gnl|danRer3|chrNA (165869009-165868878) | |
359-478, gnl|dasNov1|scaffold_11795 (44537-44425) | |
359-478, gnl|dasNov1|scaffold_11795 (44403-44570) | |
359-478, gnl|echTel1|scaffold_280627 (39039-39151) | |
359-478, gnl|echTel1|scaffold_280627 (39174-39006) | |
359-478, gnl|fr1|chrUn (107480454-107480599) | |
359-478, gnl|galGal2|chr15 (9089860-9089707) | |
359-478, gnl|hg17|chr12 (119684975-119685143) | |
359-478, gnl|Hg17|chr12 (119685116-119684997) | |
359-478, gnl|hg17|chr18 (67043978-67044091) | |
359-478, gnl|loxAfr1|scaffold_25004 (11401-11289) | |
359-478, gnl|loxAfr1|scaffold_25004 (11267-11435) | |
359-478, gnl|mm7|chr5 (114303060-114303172) | |
359-478, gnl|mm7|chr5 (114303182-114303029) | |
359-478, gnl|Mm7|chr5 (114303054-114303173) | |
359-478, gnl|monDom2|scaffold_145 (1636197-1636028) | |
359-478, gnl|oryCun1|scaffold_181350 (5886-5774) | |
359-478, gnl|oryCun1|scaffold_181350 (5748-5917) | |
359-478, gnl|panTro1|chr10 (122750590-122750758) | |
359-478, gnl|panTro1|chr17 (64022360-64022473) | |
359-478, gnl|rheMac2|chr11 (121826255-121826423) | |
359-478, gnl|rheMac2|chr18 (64884599-64884486) | |
359-478, gnl|rn3|chr12 (42666455-42666594) | |
359-478, gnl|rn3|chr5 (88071869-88071980) | |
359-478, gnl|tetNig1|chr4 (1295734-1295935) | |
359-478, gnl|tetNig1|chr4 (1295853-1295722) | |
359-478, gnl|xenTro1|scaffold_9 (5035808-5035696) | |
359-478, gnl|xenTro1|scaffold_9 (5035662-5035827) | |
555-670, gnl|bosTau2|chr17 (36248120-36248235) | |
555-670, gnl|canFam2|chr26 (19661139-19661027) | |
555-670, gnl|canFam2|chr26 (19661018-19661150) | |
555-670, gnl|danRer3|chrNA (165872077-165872189) | |
555-670, gnl|danRer3|chrNA (165872195-165872070) | |
555-670, gnl|dasNov1|scaffold_11795 (42815-42703) | |
555-670, gnl|dasNov1|scaffold_11795 (42693-42829) | |
555-670, gnl|echTel1|scaffold_280627 (41003-41115) | |
555-670, gnl|echTel1|scaffold_280627 (41121-40989) | |
555-670, gnl|fr1|chrUn (107479431-107479319) | |
555-670, gnl|fr1|chrUn (107479313-107479434) | |
555-670, gnl|galGal2|chr15 (9093381-9093493) | |
555-670, gnl|galGal2|chr15 (9093499-9093368) | |
555-670, gnl|hg17|chr12 (119683169-119683305) | |
555-670, gnl|Hg17|chr12 (119683293-119683178) | |
555-670, gnl|hg17|chr18 (67044173-67044285) | |
555-670, gnl|loxAfr1|scaffold_25004 (9637-9525) | |
555-670, gnl|loxAfr1|scaffold_25004 (9515-9651) | |
555-670, gnl|mm7|chr5 (114305687-114305799) | |
555-670, gnl|mm7|chr5 (114305808-114305674) | |
555-670, gnl|Mm7|chr5 (114305683-114305798) | |
555-670, gnl|monDom2|scaffold_145 (1642003-1641867) | |
555-670, gnl|oryCun1|scaffold_181350 (4213-4101) | |
555-670, gnl|oryCun1|scaffold_181350 (4091-4227) | |
555-670, gnl|panTro1|chr10 (122748769-122748905) | |
555-670, gnl|panTro1|chr17 (64022555-64022667) | |
555-670, gnl|rheMac2|chr11 (121824423-121824559) | |
555-670, gnl|rheMac2|chr18 (64884404-64884292) | |
555-670, gnl|rn3|chr12 (42664730-42664864) | |
555-670, gnl|rn3|chr5 (88072059-88072152) | |
555-670, gnl|tetNig1|chr4 (1296584-1296696) | |
555-670, gnl|tetNig1|chr4 (1296698-1296581) | |
555-670, gnl|xenTro1|scaffold_9 (5035537-5035435) | |
555-670, gnl|xenTro1|scaffold_9 (5034871-5034999) | |
938-1143, gnl|bosTau2|chr17 (36256040-36256245) | |
938-1143, gnl|canFam2|chr26 (19650196-19650355) | |
938-1143, gnl|danRer3|chrNA (165877195-165877030) | |
938-1143, gnl|dasNov1|scaffold_11795 (37561-37720) | |
938-1143, gnl|echTel1|scaffold_274437 (5302-5138) | |
938-1143, gnl|fr1|chrUn (107477773-107477925) | |
938-1143, gnl|galGal2|chr15 (9100770-9100611) | |
938-1143, gnl|hg17|chr12 (119667901-119668074) | |
938-1143, gnl|Hg17|chr12 (119668120-119667915) | |
938-1143, gnl|loxAfr1|scaffold_6957 (43285-43458) | |
938-1143, gnl|mm7|chr5 (114316102-114315928) | |
938-1143, gnl|Mm7|chr5 (114315880-114316085) | |
938-1143, gnl|monDom2|scaffold_145 (1654604-1654445) | |
938-1143, gnl|panTro1|chr10 (122733448-122733621) | |
938-1143, gnl|rheMac2|chr11 (121807974-121808147) | |
938-1143, gnl|rn3|chr12 (42654024-42654198) | |
938-1143, gnl|tetNig1|chr4 (1298328-1298165) | |
938-1143, gnl|xenTro1|scaffold_9 (5032211-5032358) | |
1250-2003, gnl|bosTau2|chr17 (36258260-36259023) | |
1250-2003, gnl|Hg17|chr12 (119665595-119664800) | |
1250-2003, gnl|Mm7|chr5 (114317957-114318736) |
Expressed library(ies): 18 entry(ies) | More info |
Expressed library(ies): 18 entry(ies) | Help | Less info |
cty (0.41632) | |
cov (0.264306) | |
eep (0.245128) | |
ebs (0.236602) | |
ece (0.229305) | |
cmu (0.186393) | |
nje (0.16592) | |
cje (0.165235) | |
csp (0.161186) | |
tbr (0.154178) | |
pty (0.142714) | |
csk (0.140746) | |
ssp (0.13552) | |
nmm (0.132802) | |
ova (0.129132) | |
nbm (0.0993246) | |
jej (0.0989218) | |
eje (0.0988338) |
Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cty (0.41632) | |
cov (0.264306) | |
eep (0.245128) | |
ebs (0.236602) | |
ece (0.229305) | |
cmu (0.186393) | |
nje (0.16592) | |
cje (0.165235) | |
csp (0.161186) | |
tbr (0.154178) | |
pty (0.142714) | |
csk (0.140746) | |
ssp (0.13552) | |
nmm (0.132802) | |
ova (0.129132) | |
nbm (0.0993246) | |
jej (0.0989218) | |
eje (0.0988338) |