Non-Coding RNA Search

Ss1.1-Pig4-TMW8005H15.3

Sequence:


               
               CTGTCGCCATGTCGAAAAGGTATGGTTCCGACCGGCGTTTAGCCGAGCTCTCTGATTACC
GCCGTTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATT
ACCGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATT
ACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGA
CGGGGCACCACAGGGAGGGGAGGAGAGGTAGGGTAGGGTGCAGACCCAGGTTATCACCAC
TGGCCCACGTCCTTCCTGTTTGCGGTTTTTCATTCCCTCTACCATGTGGGCCTTCCCCAG
GAGACGATCCTTTTGAGTGTTCGGCAGTAACTTACTTTATTCCTTCGCCTCAGCAGCAAA
TCTTGCTATTGGCTCTAGATGTGCGGTTCCCCTCTCCCCTGCTTCCCATCTCTCCTGGAT
GGGAATTTCTTTTATGTTTTTATTTTTTTCCTAGCTCCCTTTTATTTTTGTGCGCGATAT
TTAAGGTCGTCTGGATGGGGAAGCAACCTGCAGCTGAGGTCGGCGGCGCCTTTTTCTTTC
TAGATGTGAGGAGGCCAGGAAAGGGTTAGCTTAACCATTTCCTATGCGCCAAGCTGTGCC
AGCAGTCCAGGGGCCCTGACTTTGTCCCTCTATAGACTGTGTTGACACTGAGTTCCTGTT
GGGACAGTCGGTTGGTTTATGTCCAAATCCCTACTGACCCCTGATGTTCTAGCTGATGCT
GAGCGGCACAGTCCCACTTCCCCATCTCCCCAAGTAGGTGGTGTTAGAAAACCTTAAATT
TTTTCCCTTTTGTATGGACTACAAATAAAACTTGGGGCGATTTGCAGTTTGGAAACCTGG
TTGTCATTGTCTTGATTGCACTCAGTTTCAGAGAAGACAGTTTGACATCCAGGAAGACAT
GACAACTAAAGGGAAGGTGGCCAGAGAACCCAGGGCAGATGAGGAAAGGGGTTCAAATGT
GGGAATTAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCGCCATGTCGAAAAGGTATGGTTCCGACCGGCGTTTAGCCGAGCTCTCTGATTACC
GCCGTTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATT
ACCGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATT
ACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGA
CGGGGCACCACAGGGAGGGGAGGAGAGGTAGGGTAGGGTGCAGACCCAGGTTATCACCAC
TGGCCCACGTCCTTCCTGTTTGCGGTTTTTCATTCCCTCTACCATGTGGGCCTTCCCCAG
GAGACGATCCTTTTGAGTGTTCGGCAGTAACTTACTTTATTCCTTCGCCTCAGCAGCAAA
TCTTGCTATTGGCTCTAGATGTGCGGTTCCCCTCTCCCCTGCTTCCCATCTCTCCTGGAT
GGGAATTTCTTTTATGTTTTTATTTTTTTCCTAGCTCCCTTTTATTTTTGTGCGCGATAT
TTAAGGTCGTCTGGATGGGGAAGCAACCTGCAGCTGAGGTCGGCGGCGCCTTTTTCTTTC
TAGATGTGAGGAGGCCAGGAAAGGGTTAGCTTAACCATTTCCTATGCGCCAAGCTGTGCC
AGCAGTCCAGGGGCCCTGACTTTGTCCCTCTATAGACTGTGTTGACACTGAGTTCCTGTT
GGGACAGTCGGTTGGTTTATGTCCAAATCCCTACTGACCCCTGATGTTCTAGCTGATGCT
GAGCGGCACAGTCCCACTTCCCCATCTCCCCAAGTAGGTGGTGTTAGAAAACCTTAAATT
TTTTCCCTTTTGTATGGACTACAAATAAAACTTGGGGCGATTTGCAGTTTGGAAACCTGG
TTGTCATTGTCTTGATTGCACTCAGTTTCAGAGAAGACAGTTTGACATCCAGGAAGACAT
GACAACTAAAGGGAAGGTGGCCAGAGAACCCAGGGCAGATGAGGAAAGGGGTTCAAATGT
GGGAATTAGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476342|emb|CAH18161.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476342|emb|CAH18161.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               171-476, - strand, RNAz p=0.977695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-476, - strand, RNAz p=0.977695

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-1030, gnl|bosTau2|chr29 (36874779-36873756)
               

               
               12-1030, gnl|Hg17|chr11 (66150500-66151525)
               

               
               12-1030, gnl|Mm7|chr19 (4696619-4695597)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-1030, gnl|bosTau2|chr29 (36874779-36873756)
               

               
               12-1030, gnl|Hg17|chr11 (66150500-66151525)
               

               
               12-1030, gnl|Mm7|chr19 (4696619-4695597)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (0.29274)
               

               
               cga (0.279096)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cga (0.279096)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	12-1030, gnl\|bosTau2\|chr29 (36874779-36873756)
	12-1030, gnl\|Hg17\|chr11 (66150500-66151525)
	12-1030, gnl\|Mm7\|chr19 (4696619-4695597)

	cte (0.29274)
	cga (0.279096)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	csp (0.161186)
	cag (0.151194)
	nca (0.136874)
	nbm (0.0993246)
	eje (0.0988338)