Non-Coding RNA Search

Ss1.1-Pig4-TMW8005M06.3

Sequence:


               
               GGATATTTATCTTAAACGTTACTGAGAGGGACCTACTGTAAATGTGACATCCTCACACTT
CCCAAATCTTTAACTTTTAAGAATCTTCCCGTACACTTAAAGCCTGGAAGACTTCCAAAG
CAGGGCTTACAAAGTCTTTATTCTCAGGCTTAGTGAATTAAACCCAGGACTCTGATTTCA
TGCGATGAGCACAAGAAGCCAGTTGTATCAAGTGCTCTAACAATACCCTGGGCTTAGGGG
CTCTACGGGGAACTGAATAAACCAGGAGGGATTTGATTTAGAGCCTGGTAATTAGCTCTG
TGAAATGCTCAGTTGTAGCCAGGTTTTATAAGCTTCCAATTCTACAGCAAAGCCAGGCTC
TGAGTGTTCGAATTTCCTACGTACTTATGAAGTGTTCCTGTCTTAATCCCATGACCAACA
GTTAAAGGTTGGTAAGACTTCTACCATCTAAACACAACATAAAGCCCTCTTCATTGTTCC
GACTCTAACTCCTACTGCCGATGAACAGAAAATGAGTTGATGCAGAGGAGATTCATGTCT
TAGCAGCAACTCCGAGCATACAACTCAGCCCCATTCTCTCTTACGGTTCAAACGTACTGC
TGACCTTTGGTTTGTTTTTGTTTTTTTCCTGTTAGGATTATTTGGGAATTTTTGGTAGTT
TAAACCCTTTAACCTTTTCCTTGCTGTGTATGAGGAAAGCTAAAGCTGTTATCAACTTCT
TCTTCTACGGATACTAACACGGGTTTTCAGTGTTTGTTTGTTTTTATTATTATTAATTTT
GCGTGATGTGAATACCCTCTCCCATCAATATTTGTATTATGGTGCTATATATTTGGTAAT
GATCCTTTACTATTGGGAAGGGATTTTAAAAATACTGTGATTAAACTGGGTTTCTTCCTT
TGATTTTCATACTTTAAATATTAAAGCCACAGTCATTTATACAAAAGAAAAGCGTCTGTC
CCTGGGCAAATCTTTTGAGGACAGAGGTCAAAGTAAACTGCATAAGGTTTTTACATCATT
TCTGTATGTATTTGATATATAGATCAATATCTGTACAAATTTAATCTTTTATTTTCTTGG
TAACTTGTGATCATTGAGAAAGCATTTGAGACTTTCTCATGAAATGTATATATATAATGG
CGTGAAAAATTCCTTCAGAGAAATTTATGTTCCTTTCATTTTTACCAAATTACAAATTTT
CAGCATGGATGTGGAAAGCATTAAAATTATAACTTTGTGTACAAGATGAAAATAATTCAC
TAAATTTGCCCTTTTTTACACAAAATAAAACATTAAAGTTAAGTTGTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATATTTATCTTAAACGTTACTGAGAGGGACCTACTGTAAATGTGACATCCTCACACTT
CCCAAATCTTTAACTTTTAAGAATCTTCCCGTACACTTAAAGCCTGGAAGACTTCCAAAG
CAGGGCTTACAAAGTCTTTATTCTCAGGCTTAGTGAATTAAACCCAGGACTCTGATTTCA
TGCGATGAGCACAAGAAGCCAGTTGTATCAAGTGCTCTAACAATACCCTGGGCTTAGGGG
CTCTACGGGGAACTGAATAAACCAGGAGGGATTTGATTTAGAGCCTGGTAATTAGCTCTG
TGAAATGCTCAGTTGTAGCCAGGTTTTATAAGCTTCCAATTCTACAGCAAAGCCAGGCTC
TGAGTGTTCGAATTTCCTACGTACTTATGAAGTGTTCCTGTCTTAATCCCATGACCAACA
GTTAAAGGTTGGTAAGACTTCTACCATCTAAACACAACATAAAGCCCTCTTCATTGTTCC
GACTCTAACTCCTACTGCCGATGAACAGAAAATGAGTTGATGCAGAGGAGATTCATGTCT
TAGCAGCAACTCCGAGCATACAACTCAGCCCCATTCTCTCTTACGGTTCAAACGTACTGC
TGACCTTTGGTTTGTTTTTGTTTTTTTCCTGTTAGGATTATTTGGGAATTTTTGGTAGTT
TAAACCCTTTAACCTTTTCCTTGCTGTGTATGAGGAAAGCTAAAGCTGTTATCAACTTCT
TCTTCTACGGATACTAACACGGGTTTTCAGTGTTTGTTTGTTTTTATTATTATTAATTTT
GCGTGATGTGAATACCCTCTCCCATCAATATTTGTATTATGGTGCTATATATTTGGTAAT
GATCCTTTACTATTGGGAAGGGATTTTAAAAATACTGTGATTAAACTGGGTTTCTTCCTT
TGATTTTCATACTTTAAATATTAAAGCCACAGTCATTTATACAAAAGAAAAGCGTCTGTC
CCTGGGCAAATCTTTTGAGGACAGAGGTCAAAGTAAACTGCATAAGGTTTTTACATCATT
TCTGTATGTATTTGATATATAGATCAATATCTGTACAAATTTAATCTTTTATTTTCTTGG
TAACTTGTGATCATTGAGAAAGCATTTGAGACTTTCTCATGAAATGTATATATATAATGG
CGTGAAAAATTCCTTCAGAGAAATTTATGTTCCTTTCATTTTTACCAAATTACAAATTTT
CAGCATGGATGTGGAAAGCATTAAAATTATAACTTTGTGTACAAGATGAAAATAATTCAC
TAAATTTGCCCTTTTTTACACAAAATAAAACATTAAAGTTAAGTTGTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               757-873, - strand, RNAz p=0.658237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               757-873, - strand, RNAz p=0.658237

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1306, gnl|bosTau2|chr19 (28480782-28479470)
               

               
               1-1306, gnl|Hg17|chr17 (46611101-46609781)
               

               
               1-1306, gnl|Mm7|chr11 (94054721-94056022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1306, gnl|bosTau2|chr19 (28480782-28479470)
               

               
               1-1306, gnl|Hg17|chr17 (46611101-46609781)
               

               
               1-1306, gnl|Mm7|chr11 (94054721-94056022)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               pla (0.267344)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-1306, gnl\|bosTau2\|chr19 (28480782-28479470)
	1-1306, gnl\|Hg17\|chr17 (46611101-46609781)
	1-1306, gnl\|Mm7\|chr11 (94054721-94056022)

	pla (0.267344)
	kid (0.259471)
	bla (0.248694)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	fbs (0.175346)
	sin (0.174948)
	cli (0.152812)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	clu (0.119646)
	cbl (0.114797)
	cty (0.10408)