Non-Coding RNA Search

Ss1.1-Pig4-TMW8005N24.3

Sequence:


               
               CAGTGGCTTTATGGTAACTGACAGGCACATGTCTGGAATCAGTTGTCACTGAGGTCACTA
AGGCATTCTCAGTTCTTCAGGAAAATTCCATCAGCATCACCAACCCATCAGCATTCTGAA
GCTGGGTGAGCTTTGTAGAAAGTCCAACAGAAAGTCCTCCTCTATATGTAGACTTCAGCC
CTAGAGCCAGTGGCAAGGTGGTTCAAAACAAATCCAGCGGGCCTACCAGAAACATCCAGG
ACCGGTTTTCAGTGTGGAAGTGGAGTAGATCCCTTAGGTGGTATGTGATGGCTGCTGCAT
GTTCCCTGTGGAACCCCAACATAGTCACTTGTAAAAAGCTTATTCTACTTTTATTTTTGG
CTAAGGCCATGCCAGGCGAATGCAGTTATGCACAGGGTACATGGAAAACCTATACCTGAT
TCAGACTTCCCAAAATTTAGAGGCAGGGCAAAGGATTGGTATTTGGGGGAAATGGCCCTT
CAGCAGCAAAAAGGCATGCCCCTTAGAAATGCTCCAAGCATGCAGGGTTTTAGTCCATGT
TTTGTTTTGCTATATAGAGCAATAATACACACAGTGGAGAATATGTTCTGAAGCAAGGAA
TAGATGAAGGGTTAGGAAAGGGAGGCAGTAAGGCCAAAATGAACCTTTTAGAGTATCTTC
TGACTTTCAGCATGTTAGGGGGATTATGAACAAATGCCCCATGTGGTGCAATGCTTTATA
GCACAATGATCTAGATTTCAGACTTTGTTAAGGTTTTTTTTAATCTCGGATGTGCACGGT
GTGACTGGCAGAGTGAGTTTAAAAGCTTTCAGAGTGATTAATTGCATGGCAGGCACCCAC
ACTAACTTCGCTTCCCCAACTTGACTGCCGCACCCATGTACGTTTCCGCTGAGGAATGGC
AGTGGGAGGGTATTCCTCTGCACGAAGTCACGTGTAGTCAAGTCTCTGCAGTCACTTCTG
ATTGATTCACTTGCACTGTTTGGGAAATGCAGGTTTACCAAAATACATGTTTGGAATAAA
AAAAAAAATGGCTGCAAACGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGGCTTTATGGTAACTGACAGGCACATGTCTGGAATCAGTTGTCACTGAGGTCACTA
AGGCATTCTCAGTTCTTCAGGAAAATTCCATCAGCATCACCAACCCATCAGCATTCTGAA
GCTGGGTGAGCTTTGTAGAAAGTCCAACAGAAAGTCCTCCTCTATATGTAGACTTCAGCC
CTAGAGCCAGTGGCAAGGTGGTTCAAAACAAATCCAGCGGGCCTACCAGAAACATCCAGG
ACCGGTTTTCAGTGTGGAAGTGGAGTAGATCCCTTAGGTGGTATGTGATGGCTGCTGCAT
GTTCCCTGTGGAACCCCAACATAGTCACTTGTAAAAAGCTTATTCTACTTTTATTTTTGG
CTAAGGCCATGCCAGGCGAATGCAGTTATGCACAGGGTACATGGAAAACCTATACCTGAT
TCAGACTTCCCAAAATTTAGAGGCAGGGCAAAGGATTGGTATTTGGGGGAAATGGCCCTT
CAGCAGCAAAAAGGCATGCCCCTTAGAAATGCTCCAAGCATGCAGGGTTTTAGTCCATGT
TTTGTTTTGCTATATAGAGCAATAATACACACAGTGGAGAATATGTTCTGAAGCAAGGAA
TAGATGAAGGGTTAGGAAAGGGAGGCAGTAAGGCCAAAATGAACCTTTTAGAGTATCTTC
TGACTTTCAGCATGTTAGGGGGATTATGAACAAATGCCCCATGTGGTGCAATGCTTTATA
GCACAATGATCTAGATTTCAGACTTTGTTAAGGTTTTTTTTAATCTCGGATGTGCACGGT
GTGACTGGCAGAGTGAGTTTAAAAGCTTTCAGAGTGATTAATTGCATGGCAGGCACCCAC
ACTAACTTCGCTTCCCCAACTTGACTGCCGCACCCATGTACGTTTCCGCTGAGGAATGGC
AGTGGGAGGGTATTCCTCTGCACGAAGTCACGTGTAGTCAAGTCTCTGCAGTCACTTCTG
ATTGATTCACTTGCACTGTTTGGGAAATGCAGGTTTACCAAAATACATGTTTGGAATAAA
AAAAAAAATGGCTGCAAACGAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1041, gnl|bosTau2|chr22 (9160544-9159510)
               

               
               1-1041, gnl|Hg17|chr3 (37838953-37840002)
               

               
               1-1041, gnl|Mm7|chr9 (118580109-118581207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1041, gnl|bosTau2|chr22 (9160544-9159510)
               

               
               1-1041, gnl|Hg17|chr3 (37838953-37840002)
               

               
               1-1041, gnl|Mm7|chr9 (118580109-118581207)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               aor (0.390549)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	1-1041, gnl\|bosTau2\|chr22 (9160544-9159510)
	1-1041, gnl\|Hg17\|chr3 (37838953-37840002)
	1-1041, gnl\|Mm7\|chr9 (118580109-118581207)

	aor (0.390549)
	fcc (0.197785)
	gul (0.177588)
	mcp (0.170648)
	eye (0.170503)
	csp (0.161186)
	lun (0.150489)
	liv (0.146284)
	spl (0.143184)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	tra (0.123092)
	cty (0.10408)