Ss1.1-Pig4-TMW8005P02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATCACGAGTCTGCAGAATAGTTTTCAGCTTCGATGTCAGCAATGTGAGGACCAACAGA GAGAAGAAGCAACTAGGCTACGAGGTGAACTAGAGAAGTTGAGAAAGGAATGGAATGTAT TGGAAACCGAATGCCGTTCTCTAAGAAAGGAAAGGGGGTTGCTATCATCATAACTACAGC GGCAAGAAAAAGAATTGCACAATTCTCAGAAACAGAGTTTAGAGCTTACCAGTGATCTCA GCATCCTGCAGATGACTAGGAAAGAGCTTGAGAATCAAGTGGGATCCTTGAAAGAACAGC ATCTTCGGGATTCAGCTGATTTAAAAACTCTTCTCAGTAAGGCTGAAAACCAAGCAAAGG ATGTACAGAAAGAGTATGAAAAGACACAGACTGTACTCTCAGAACTGAAGTTGAAGTTTG AAATGACTGAGCAGGAAAAACAATCAATCACAGATGAGCTCAAACAATGTAAAGACAACC TGAAGCTGCTCCGAGAGAAAGGAAATAATCCTTCCATATTACAACCCGTCCCAGCCGTAT TCATCGGCCTATTCCTGGCTTTCCTGTTTTGGTGTTTCGGTCCATTGTGGTAGAGAAAGA AACCCTGGCCCTGGATGCCCATGTTGGCTGCCCTGGTTGCAGTGACAGCCATCGTGCTGT ACGTGCCAGGTCTAGCCAGAGCTTCTCCATGAGAGCGTTTCTTGAGTCTGTACACCGTCC TCCCTCTAGAAGCTGGCACCACACTCGTGCTGGGGACAAACAGAACCATTTCTTCCTTTT TACCTCTTAAAACAGCAGAAGTGCAAGAATACAGCTGTAGGGTCATTGCTTTAAATTATA TAAAATGTACCTGTCTATAAAGAGGATATAAAATTGTGACTTTATTCTACTGTAAGCAAT AATTTGCTTGCAATTTTTCATGTAATTTTTAACTTAGTATGTTGAAATTCTGAATATTAT GGTGGCCTAAAGTAGGCTTCTTGGTACACCAAATTATTTATAACATTAAATTTATGGGTA TTTTACTCTGAACTCTAATGGCCAGATAATTCATTTTTCTGATTCGATACCTACCCAAAC CAAACAACTGATACATACATGGGAAGAGAGGCCCTGTGTGCTCAGTGCCTATGAGTTTGA AATATATACACATATATATATTTTTTACATATTTACGCCATTTTTACTTCTTATAAAACC ACTGAGCTATTGGGAACAAGACTTAGAGACAACTATTTGCGTGGATTTTTTTTTTTTTTT TTTAAGGAGAAATACACTTGGAAAATATTCTGTTCTAGTGATAATTTGGGGAATATGTGC ACGCTTGTTCAGCCTTAATATGACTTGACGATGTGGAGGACATCAACTTTGAAAAACTTT CCATGAGAGTGTGTATTTTCTTGAGCAAACTGAAGTATTTCTGGGAGCAAAAACATAGTA ATTATACAATTTCAGTGCAGTAAACCAAACTGTTGAGTCAATTGGAATGTAATTTATTAA ACCTCATGTATTTAAAGAGATATTTTCTTTAAAAGCCAAGTTACTTTCTCATATACAGCA TTTTAGGAAGCATGATTTTTTTTTTCTATCATCTCTTCCTCCAAGCATGTTTAATTGAAG AAAGAATTAATATCTCTTTAGATAAGCTTTTACTGACTTAATTTGGTTATGATATTTCAA AGCTAATTCATGTTTGAGGTGAGCTGTTGACACCTACCAACAGATTTCCTGGTTGGGTAT GCAAATGGTTATTTTCTTTTTACTGTTGTTAATTGGGACGTTCTGTTAATGAGAAGTGCT ATTCCCAAGATTAATAGTGTTCCATGCACAGTGAAGCACCTAAACACTGCTTGATGTTAC AAATTTAAAACACGGAAGTGAAAGTTTAGCTATGGTTTTGTGCGGCACCACAGTTATGTC AATAAAGTTTATTTAGGTCATAGACTATCCTAAAGTATCACATAGTTAAATTTTTCAGTC AATGAAGACTGGGAGGGAATGTCAGTGAATTGGCTTGAATGTTCTGTAGCAATCCACAGG CCTAGCCAAATATTGAAAGAGAAGTTTAGGATATAATTTGCCTTGTGATGTTTGGAAGTC ATTGTTTATACTTTAAAGGTTACATTTTAAGCTATTGGGGGTTTGCTTTTGGGAGGATCA CTAGATTTATGGAGGAATTAGTCACAAATGACTTGTAGAAATTACTGTCATGTAGTTCAT TTCATCATTTTCTGTTGCAGGAAGCCACTCCACCACAGAATGCTAATATGCCAGTGGTAC CCAGTACCTCTTGTATATAGGTTATTGCAAATATTGTTCTGAAATGCTTACCTTCAGAAT TACATTTTTTAAAGTAAATAATTGTTTTAAATCTATTTTGTAAAGATATAAAGTACAATA GAATTTCTGGAGTACAAATTAAACTATTTGCACTAACACACGTGATGTGCATGATTTAAT AAAATAACTTTACTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATCACGAGTCTGCAGAATAGTTTTCAGCTTCGATGTCAGCAATGTGAGGACCAACAGA GAGAAGAAGCAACTAGGCTACGAGGTGAACTAGAGAAGTTGAGAAAGGAATGGAATGTAT TGGAAACCGAATGCCGTTCTCTAAGAAAGGAAAGGGGGTTGCTATCATCATAACTACAGC GGCAAGAAAAAGAATTGCACAATTCTCAGAAACAGAGTTTAGAGCTTACCAGTGATCTCA GCATCCTGCAGATGACTAGGAAAGAGCTTGAGAATCAAGTGGGATCCTTGAAAGAACAGC ATCTTCGGGATTCAGCTGATTTAAAAACTCTTCTCAGTAAGGCTGAAAACCAAGCAAAGG ATGTACAGAAAGAGTATGAAAAGACACAGACTGTACTCTCAGAACTGAAGTTGAAGTTTG AAATGACTGAGCAGGAAAAACAATCAATCACAGATGAGCTCAAACAATGTAAAGACAACC TGAAGCTGCTCCGAGAGAAAGGAAATAATCCTTCCATATTACAACCCGTCCCAGCCGTAT TCATCGGCCTATTCCTGGCTTTCCTGTTTTGGTGTTTCGGTCCATTGTGGTAGAGAAAGA AACCCTGGCCCTGGATGCCCATGTTGGCTGCCCTGGTTGCAGTGACAGCCATCGTGCTGT ACGTGCCAGGTCTAGCCAGAGCTTCTCCATGAGAGCGTTTCTTGAGTCTGTACACCGTCC TCCCTCTAGAAGCTGGCACCACACTCGTGCTGGGGACAAACAGAACCATTTCTTCCTTTT TACCTCTTAAAACAGCAGAAGTGCAAGAATACAGCTGTAGGGTCATTGCTTTAAATTATA TAAAATGTACCTGTCTATAAAGAGGATATAAAATTGTGACTTTATTCTACTGTAAGCAAT AATTTGCTTGCAATTTTTCATGTAATTTTTAACTTAGTATGTTGAAATTCTGAATATTAT GGTGGCCTAAAGTAGGCTTCTTGGTACACCAAATTATTTATAACATTAAATTTATGGGTA TTTTACTCTGAACTCTAATGGCCAGATAATTCATTTTTCTGATTCGATACCTACCCAAAC CAAACAACTGATACATACATGGGAAGAGAGGCCCTGTGTGCTCAGTGCCTATGAGTTTGA AATATATACACATATATATATTTTTTACATATTTACGCCATTTTTACTTCTTATAAAACC ACTGAGCTATTGGGAACAAGACTTAGAGACAACTATTTGCGTGGATTTTTTTTTTTTTTT TTTAAGGAGAAATACACTTGGAAAATATTCTGTTCTAGTGATAATTTGGGGAATATGTGC ACGCTTGTTCAGCCTTAATATGACTTGACGATGTGGAGGACATCAACTTTGAAAAACTTT CCATGAGAGTGTGTATTTTCTTGAGCAAACTGAAGTATTTCTGGGAGCAAAAACATAGTA ATTATACAATTTCAGTGCAGTAAACCAAACTGTTGAGTCAATTGGAATGTAATTTATTAA ACCTCATGTATTTAAAGAGATATTTTCTTTAAAAGCCAAGTTACTTTCTCATATACAGCA TTTTAGGAAGCATGATTTTTTTTTTCTATCATCTCTTCCTCCAAGCATGTTTAATTGAAG AAAGAATTAATATCTCTTTAGATAAGCTTTTACTGACTTAATTTGGTTATGATATTTCAA AGCTAATTCATGTTTGAGGTGAGCTGTTGACACCTACCAACAGATTTCCTGGTTGGGTAT GCAAATGGTTATTTTCTTTTTACTGTTGTTAATTGGGACGTTCTGTTAATGAGAAGTGCT ATTCCCAAGATTAATAGTGTTCCATGCACAGTGAAGCACCTAAACACTGCTTGATGTTAC AAATTTAAAACACGGAAGTGAAAGTTTAGCTATGGTTTTGTGCGGCACCACAGTTATGTC AATAAAGTTTATTTAGGTCATAGACTATCCTAAAGTATCACATAGTTAAATTTTTCAGTC AATGAAGACTGGGAGGGAATGTCAGTGAATTGGCTTGAATGTTCTGTAGCAATCCACAGG CCTAGCCAAATATTGAAAGAGAAGTTTAGGATATAATTTGCCTTGTGATGTTTGGAAGTC ATTGTTTATACTTTAAAGGTTACATTTTAAGCTATTGGGGGTTTGCTTTTGGGAGGATCA CTAGATTTATGGAGGAATTAGTCACAAATGACTTGTAGAAATTACTGTCATGTAGTTCAT TTCATCATTTTCTGTTGCAGGAAGCCACTCCACCACAGAATGCTAATATGCCAGTGGTAC CCAGTACCTCTTGTATATAGGTTATTGCAAATATTGTTCTGAAATGCTTACCTTCAGAAT TACATTTTTTAAAGTAAATAATTGTTTTAAATCTATTTTGTAAAGATATAAAGTACAATA GAATTTCTGGAGTACAAATTAAACTATTTGCACTAACACACGTGATGTGCATGATTTAAT AAAATAACTTTACTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 1054-1165, - strand, RNAz p=0.905201 | |
| 1959-2076, - strand, RNAz p=0.519803 | |
| 1966-2066, - strand, RNAz p=0.960524 | |
| 2219-2481, - strand, RNAz p=0.911297 | |
| 2236-2355, - strand, RNAz p=0.57656 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1054-1165, - strand, RNAz p=0.905201 | |
| 1959-2076, - strand, RNAz p=0.519803 | |
| 1966-2066, - strand, RNAz p=0.960524 | |
| 2219-2481, - strand, RNAz p=0.911297 | |
| 2236-2355, - strand, RNAz p=0.57656 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 200-374, gnl|bosTau2|chr22 (31655204-31655378) | |
| 200-374, gnl|canFam2|chr20 (35600109-35599915) | |
| 200-374, gnl|danRer3|chrNA (103368449-103368635) | |
| 200-374, gnl|dasNov1|scaffold_12858 (41378-41184) | |
| 200-374, gnl|echTel1|scaffold_306091 (43739-43545) | |
| 200-374, gnl|galGal2|chr12 (8888908-8889102) | |
| 200-374, gnl|hg17|chr3 (57877662-57877856) | |
| 200-374, gnl|Hg17|chr3 (57877670-57877844) | |
| 200-374, gnl|mm7|chr14 (23813372-23813178) | |
| 200-374, gnl|Mm7|chr14 (23813362-23813188) | |
| 200-374, gnl|monDom2|scaffold_5 (2800647-2800841) | |
| 200-374, gnl|oryCun1|scaffold_207772 (47913-48107) | |
| 200-374, gnl|panTro1|chr2 (59628206-59628400) | |
| 200-374, gnl|rheMac2|chr2 (78475903-78475709) | |
| 200-374, gnl|rn3|chr16 (1715019-1714825) | |
| 200-374, gnl|xenTro1|scaffold_80 (2064704-2064891) | |
| 1054-2481, gnl|bosTau2|chr22 (31663468-31664898) | |
| 1054-2481, gnl|canFam2|chr20 (35592041-35590790) | |
| 1054-2481, gnl|dasNov1|scaffold_12858 (32451-31255) | |
| 1054-2481, gnl|echTel1|scaffold_306091 (35960-34742) | |
| 1054-2481, gnl|galGal2|chr12 (8895072-8896313) | |
| 1054-2481, gnl|hg17|chr3 (57888448-57889636) | |
| 1054-2481, gnl|Hg17|chr3 (57888518-57889935) | |
| 1054-2481, gnl|loxAfr1|scaffold_101733 (5488-4270) | |
| 1054-2481, gnl|mm7|chr14 (23805397-23804239) | |
| 1054-2481, gnl|Mm7|chr14 (23805326-23803939) | |
| 1054-2481, gnl|monDom2|scaffold_5 (2807930-2809113) | |
| 1054-2481, gnl|oryCun1|scaffold_207772 (57300-58493) | |
| 1054-2481, gnl|panTro1|chr2 (59638995-59640189) | |
| 1054-2481, gnl|rheMac2|chr2 (78465141-78463952) | |
| 1054-2481, gnl|rn3|chr16 (1707003-1705854) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 200-374, gnl|bosTau2|chr22 (31655204-31655378) | |
| 200-374, gnl|canFam2|chr20 (35600109-35599915) | |
| 200-374, gnl|danRer3|chrNA (103368449-103368635) | |
| 200-374, gnl|dasNov1|scaffold_12858 (41378-41184) | |
| 200-374, gnl|echTel1|scaffold_306091 (43739-43545) | |
| 200-374, gnl|galGal2|chr12 (8888908-8889102) | |
| 200-374, gnl|hg17|chr3 (57877662-57877856) | |
| 200-374, gnl|Hg17|chr3 (57877670-57877844) | |
| 200-374, gnl|mm7|chr14 (23813372-23813178) | |
| 200-374, gnl|Mm7|chr14 (23813362-23813188) | |
| 200-374, gnl|monDom2|scaffold_5 (2800647-2800841) | |
| 200-374, gnl|oryCun1|scaffold_207772 (47913-48107) | |
| 200-374, gnl|panTro1|chr2 (59628206-59628400) | |
| 200-374, gnl|rheMac2|chr2 (78475903-78475709) | |
| 200-374, gnl|rn3|chr16 (1715019-1714825) | |
| 200-374, gnl|xenTro1|scaffold_80 (2064704-2064891) | |
| 1054-2481, gnl|bosTau2|chr22 (31663468-31664898) | |
| 1054-2481, gnl|canFam2|chr20 (35592041-35590790) | |
| 1054-2481, gnl|dasNov1|scaffold_12858 (32451-31255) | |
| 1054-2481, gnl|echTel1|scaffold_306091 (35960-34742) | |
| 1054-2481, gnl|galGal2|chr12 (8895072-8896313) | |
| 1054-2481, gnl|hg17|chr3 (57888448-57889636) | |
| 1054-2481, gnl|Hg17|chr3 (57888518-57889935) | |
| 1054-2481, gnl|loxAfr1|scaffold_101733 (5488-4270) | |
| 1054-2481, gnl|mm7|chr14 (23805397-23804239) | |
| 1054-2481, gnl|Mm7|chr14 (23805326-23803939) | |
| 1054-2481, gnl|monDom2|scaffold_5 (2807930-2809113) | |
| 1054-2481, gnl|oryCun1|scaffold_207772 (57300-58493) | |
| 1054-2481, gnl|panTro1|chr2 (59638995-59640189) | |
| 1054-2481, gnl|rheMac2|chr2 (78465141-78463952) | |
| 1054-2481, gnl|rn3|chr16 (1707003-1705854) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| isp (0.902256) | |
| lyg (0.798616) | |
| bfe (0.749288) | |
| vin (0.665115) | |
| aor (0.585823) | |
| liv (0.585137) | |
| lin (0.582411) | |
| gul (0.532765) | |
| ret (0.514933) | |
| tbr (0.462535) | |
| cbl (0.45919) | |
| hea (0.408998) | |
| tra (0.369276) | |
| eru (0.360144) | |
| sme (0.305437) | |
| ute (0.265569) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| col (0.195008) | |
| sag (0.182715) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| thg (0.126791) | |
| ese (0.126502) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.902256) | |
| lyg (0.798616) | |
| bfe (0.749288) | |
| vin (0.665115) | |
| aor (0.585823) | |
| liv (0.585137) | |
| lin (0.582411) | |
| gul (0.532765) | |
| ret (0.514933) | |
| tbr (0.462535) | |
| cbl (0.45919) | |
| hea (0.408998) | |
| tra (0.369276) | |
| eru (0.360144) | |
| sme (0.305437) | |
| ute (0.265569) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| col (0.195008) | |
| sag (0.182715) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fat (0.147427) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| thg (0.126791) | |
| ese (0.126502) | |
| jca (0.11396) | |
| ldo (0.0970026) |