Non-Coding RNA Search

Ss1.1-Pig4-TMW8006A23.3

Sequence:


               
               CCAAGAAGACCAAGTCCAGTAAACCAAAGCTCCTGGTAGTTGACATCCGAAATAGTGAAG
ATTTTATTCGAGGTCATATTTCTGGCAGCATCAACATTCCATTCATCACTGCATTCACTG
CAGAAGGGGAGCTTACCTAGGGCCCTTACACTGCCATGCTCCAGAGCTTCAGAGGAAAGG
TCATTGTCATTGTGGGGCATGTGGCAAAGCACACAGCAGAGTTTGCAGCTCATCTTGTGA
AGATGAAATATCCAAGAATCTGTATTCTAGATGGTGGTATTAATAAGATCAAGCCAACAG
GCCTCCTCACTGTCCCATCTCCTCAGATATGAAGGACAAGAGTATGGCTGACAAAAGGAC
AAAGTGGCATCACCCCGGCAGCACAGCTCTTCACAGCCTTGCCACTCTAAGACAAAACTA
GACTTCCAGGTTATTGCATTTCCATAAAGTTTTGTCATGAGACATTTTTTTTTTTTAATC
TCATGACCCAAATGTTCAGCTATCCAGGCAACAAACTTGACAGTACATGTATTGCTGAAA
GAATTTTCTTAACAGTGAAATCCGATCATGTATTTTCACCACACCAACACAAAGCCAGAA
GAATTCAGCTGACGAGGTAGATTTAGCATTATCAAGAAATCTCAGTTGCACTGAAAAAGC
TGTTTTCCATTGCACTGAACAGAGTCTCAACAAAGGTATTCCTTACAAATATATACTGAA
TGCGGGCTGAGATCATCCTTCCATGATAATGAAAAGTGAAAAAGCTATTCACAATACATT
CCTTCTGAGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGAAGACCAAGTCCAGTAAACCAAAGCTCCTGGTAGTTGACATCCGAAATAGTGAAG
ATTTTATTCGAGGTCATATTTCTGGCAGCATCAACATTCCATTCATCACTGCATTCACTG
CAGAAGGGGAGCTTACCTAGGGCCCTTACACTGCCATGCTCCAGAGCTTCAGAGGAAAGG
TCATTGTCATTGTGGGGCATGTGGCAAAGCACACAGCAGAGTTTGCAGCTCATCTTGTGA
AGATGAAATATCCAAGAATCTGTATTCTAGATGGTGGTATTAATAAGATCAAGCCAACAG
GCCTCCTCACTGTCCCATCTCCTCAGATATGAAGGACAAGAGTATGGCTGACAAAAGGAC
AAAGTGGCATCACCCCGGCAGCACAGCTCTTCACAGCCTTGCCACTCTAAGACAAAACTA
GACTTCCAGGTTATTGCATTTCCATAAAGTTTTGTCATGAGACATTTTTTTTTTTTAATC
TCATGACCCAAATGTTCAGCTATCCAGGCAACAAACTTGACAGTACATGTATTGCTGAAA
GAATTTTCTTAACAGTGAAATCCGATCATGTATTTTCACCACACCAACACAAAGCCAGAA
GAATTCAGCTGACGAGGTAGATTTAGCATTATCAAGAAATCTCAGTTGCACTGAAAAAGC
TGTTTTCCATTGCACTGAACAGAGTCTCAACAAAGGTATTCCTTACAAATATATACTGAA
TGCGGGCTGAGATCATCCTTCCATGATAATGAAAAGTGAAAAAGCTATTCACAATACATT
CCTTCTGAGTAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               294-791, gnl|bosTau2|chr29 (40542352-40541857)
               

               
               294-791, gnl|Hg17|chr4 (107325369-107324873)
               

               
               294-791, gnl|Mm7|chr3 (132634962-132635415)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               294-791, gnl|bosTau2|chr29 (40542352-40541857)
               

               
               294-791, gnl|Hg17|chr4 (107325369-107324873)
               

               
               294-791, gnl|Mm7|chr3 (132634962-132635415)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	294-791, gnl\|bosTau2\|chr29 (40542352-40541857)
	294-791, gnl\|Hg17\|chr4 (107325369-107324873)
	294-791, gnl\|Mm7\|chr3 (132634962-132635415)