Non-Coding RNA Search

Ss1.1-Pig4-TMW8006B02.3

Sequence:


               
               CTTTTGGGGCTAGGATAAGACAAAGCAAAGAAAAAGCATAACAGCAAAGGAGCCCGTGAA
ATTTTTCAATTACCACGTTATAAACTGAAACCATATGAGTTTGTGGGTGAACTCGTTTAT
AACCCCTTCTGTTTTGATTTTGCATTTGTATGTGGGGGAAACTGGTTTTAATTTATTTTT
AGGTATTTATTAGCCATGTTTTAGGTTGTGAAAATAAATCACAACTGTGCATGTACCACA
CAGACAACTTAAAAAACACAAGACCCCCAAAACTAATTACGTGGTTTTCTTCCAAGACAC
TGTAATAAACAGAAAATAGATTCTAACACTTCTCAAGAAATCATTTTTCCATCAAAATTT
CAAAGTTAATGGATTTATATGTATTTTTAATTTTACGCACCTTAGTATCTCTTCATGGCT
CAGAGACAACACGGTCACTGGTTGGCATAGGTCAACAGGAATTTGACTTTGCAGAAGGGC
CAGGGTATAATTTACTCTACATGTAAAGGGTACTCGGATAATCCAATAGAAAAGGATTGT
CTAAGAGTTTTAGACCTTTTCTGATCATCTGACTCAGTAGACTGTGTGACAGTATGCCAT
CTGAGCCATAATTCTTGAAATTATAGAAAAAAAAAACTGTCCAGTGACTGCAGTTGATCA
TAGACTATTGAAAACTCTTCTTTCCTGCTGAAACCGAAGTGTTAACACAAGAGCGTAGCG
ATGGATACAGAGGCAACACGTCCCGGATTCGTGTCTGTGTTCTACCTTCAAAACAATCTG
TTTCATTGGAAATATACATGTTTAAACTTTTTAGGAGTTAGTGCAATAAGAATGTGACTA
TGCTGAGACCTTTCCAGATGCTGTCATTAATTGTCATTTTGTTAACAGGCTTTAGAAGAA
GCCTCTCCACGTTTTCGCTTCAAATCGAAAGCATGTCTGTGAATTGCTCGTCTCCCTTCA
GTTTCTGTGTGTCACCAAGGAGAGGTTCTTAAAGTCGATGTTATACCCGTGCCACTTGTA
GGTAGCCTCAACTGTAATGTTTCGTGTTTACATTTCGAGCTGGGATCTTGATTAGTTAAA
TGAGTCAATATACCACTGCCACGGCCGAAGGACCAAGTTTTGGAATGCACAGTATTATAG
ACAACAAGCGAAGCAAACAAAAGTTGATCCTCACACATGCCATCCTCCTGTGTCACTTTA
CAGCTGTTTTGTGTTTTGGTTTTTCTTCCCCAGTTATTTATTATTGATAATAACTTACTT
TTTCTTACATTCTGTTGTAAATAAAGTACAAAGCAATCTTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGGGGCTAGGATAAGACAAAGCAAAGAAAAAGCATAACAGCAAAGGAGCCCGTGAA
ATTTTTCAATTACCACGTTATAAACTGAAACCATATGAGTTTGTGGGTGAACTCGTTTAT
AACCCCTTCTGTTTTGATTTTGCATTTGTATGTGGGGGAAACTGGTTTTAATTTATTTTT
AGGTATTTATTAGCCATGTTTTAGGTTGTGAAAATAAATCACAACTGTGCATGTACCACA
CAGACAACTTAAAAAACACAAGACCCCCAAAACTAATTACGTGGTTTTCTTCCAAGACAC
TGTAATAAACAGAAAATAGATTCTAACACTTCTCAAGAAATCATTTTTCCATCAAAATTT
CAAAGTTAATGGATTTATATGTATTTTTAATTTTACGCACCTTAGTATCTCTTCATGGCT
CAGAGACAACACGGTCACTGGTTGGCATAGGTCAACAGGAATTTGACTTTGCAGAAGGGC
CAGGGTATAATTTACTCTACATGTAAAGGGTACTCGGATAATCCAATAGAAAAGGATTGT
CTAAGAGTTTTAGACCTTTTCTGATCATCTGACTCAGTAGACTGTGTGACAGTATGCCAT
CTGAGCCATAATTCTTGAAATTATAGAAAAAAAAAACTGTCCAGTGACTGCAGTTGATCA
TAGACTATTGAAAACTCTTCTTTCCTGCTGAAACCGAAGTGTTAACACAAGAGCGTAGCG
ATGGATACAGAGGCAACACGTCCCGGATTCGTGTCTGTGTTCTACCTTCAAAACAATCTG
TTTCATTGGAAATATACATGTTTAAACTTTTTAGGAGTTAGTGCAATAAGAATGTGACTA
TGCTGAGACCTTTCCAGATGCTGTCATTAATTGTCATTTTGTTAACAGGCTTTAGAAGAA
GCCTCTCCACGTTTTCGCTTCAAATCGAAAGCATGTCTGTGAATTGCTCGTCTCCCTTCA
GTTTCTGTGTGTCACCAAGGAGAGGTTCTTAAAGTCGATGTTATACCCGTGCCACTTGTA
GGTAGCCTCAACTGTAATGTTTCGTGTTTACATTTCGAGCTGGGATCTTGATTAGTTAAA
TGAGTCAATATACCACTGCCACGGCCGAAGGACCAAGTTTTGGAATGCACAGTATTATAG
ACAACAAGCGAAGCAAACAAAAGTTGATCCTCACACATGCCATCCTCCTGTGTCACTTTA
CAGCTGTTTTGTGTTTTGGTTTTTCTTCCCCAGTTATTTATTATTGATAATAACTTACTT
TTTCTTACATTCTGTTGTAAATAAAGTACAAAGCAATCTTCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               525-638, + strand, RNAz p=0.923695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-638, + strand, RNAz p=0.923695

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1301, gnl|bosTau2|chr19 (43700574-43701897)
               

               
               3-1301, gnl|Hg17|chr17 (63122523-63123834)
               

               
               3-1301, gnl|Mm7|chr11 (107318131-107316933)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1301, gnl|bosTau2|chr19 (43700574-43701897)
               

               
               3-1301, gnl|Hg17|chr17 (63122523-63123834)
               

               
               3-1301, gnl|Mm7|chr11 (107318131-107316933)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               cbe (0.478469)
               

               
               lyg (0.399308)
               

               
               sag (0.36543)
               

               
               spc (0.340097)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               lyg (0.399308)
               

               
               sag (0.36543)
               

               
               spc (0.340097)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	3-1301, gnl\|bosTau2\|chr19 (43700574-43701897)
	3-1301, gnl\|Hg17\|chr17 (63122523-63123834)
	3-1301, gnl\|Mm7\|chr11 (107318131-107316933)

	cbe (0.478469)
	lyg (0.399308)
	sag (0.36543)
	spc (0.340097)
	fce (0.271592)
	pla (0.267344)
	ova (0.258264)
	thg (0.253582)
	pan (0.23596)
	gul (0.177588)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	nmm (0.132802)
	sug (0.127291)
	bla (0.124347)
	clu (0.119646)
	cbl (0.114797)
	jej (0.0989218)