Non-Coding RNA Search

Ss1.1-Pig4-TMW8006B07.3

Sequence:


               
               CAATGCACCTAGAAAATTGGTCTTTTTTTTTTTTTTTAATAGCTATTTGCTAAATGCTGT
TCTTACACAGAATTTCTTAATTTTCACCGAGCAGAGGTGGAAAAATACTTTTGCTTTCAG
GGAAAATGGTATAACATTAATTTATTAATGAATTGGTAATATACAAAACAATTAATCGTT
TATAGGTTTTTTTTTGGTAATTTAAATGGCATTTCTATGCAGGCAGCACATCGGACTAGT
TAATCTATTGCTTAGACTTAACTAGTTATCAGATCCTTTGAAAAGAGAAATATTTACAGA
ATATGACTAATTTGGGGAAAATGAAGTTTTGGTTTACTCGTGTTTCAACTCTGCTGTCAG
AGGATTGTTCTTGACACACCTAAAGGCTCGTAGTGAAAGAACCCACCAATGAGGTGTTTT
GTTTTGGTGTGCAGCGCTGTCCTTGGGCCCGTAGCGATTTAACTGGACTTCTCAAGATAA
ATGGTACCAGCAGTCTCTTAAAAAGATGCCTTAATCCATTCCTCGAGCAGGGACCTCCGT
GGAGATGCTAGCCCAGTGTACTGCTTTTCGGCAGCTGGCCTTCTGCCTCCGACTTGCACG
TTAATCAGATTAGCCTGTATTTCTTCAGCGAATCTTCCTAATAGCTTCCAGATTCATTGG
CGACAGAGGAAGCCTTTTCAAATCTTCACGTCCCATCGTAGAAATTTGAAACACCGAGTT
GTCGTGCTGATGGTTTTAAGCATCCTTCCATCTTTTTAAGGGATTGCTTCCGCCTCCTTC
CTGCAGGACCTCCCCCAAAGATCCCGCCCAGTGCCAACGTCACACAAAACACTGCCACGT
CGTTCGTTCCATATGAAAGAGTGTTTTGCTTCCGAAACACCTACTCCCTCTGCTCTAGCC
ATGCAACATGAATGCAGATCACACTGATTTTACGTGTTACGAAATGGGAGAACGTATTTA
ATAAAACCTGTTAATTTTTATACTGACAATAAAAATGTTTCTACAGATATTAATGTTAAC
AAGACAAAATAAATGTCACGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGCACCTAGAAAATTGGTCTTTTTTTTTTTTTTTAATAGCTATTTGCTAAATGCTGT
TCTTACACAGAATTTCTTAATTTTCACCGAGCAGAGGTGGAAAAATACTTTTGCTTTCAG
GGAAAATGGTATAACATTAATTTATTAATGAATTGGTAATATACAAAACAATTAATCGTT
TATAGGTTTTTTTTTGGTAATTTAAATGGCATTTCTATGCAGGCAGCACATCGGACTAGT
TAATCTATTGCTTAGACTTAACTAGTTATCAGATCCTTTGAAAAGAGAAATATTTACAGA
ATATGACTAATTTGGGGAAAATGAAGTTTTGGTTTACTCGTGTTTCAACTCTGCTGTCAG
AGGATTGTTCTTGACACACCTAAAGGCTCGTAGTGAAAGAACCCACCAATGAGGTGTTTT
GTTTTGGTGTGCAGCGCTGTCCTTGGGCCCGTAGCGATTTAACTGGACTTCTCAAGATAA
ATGGTACCAGCAGTCTCTTAAAAAGATGCCTTAATCCATTCCTCGAGCAGGGACCTCCGT
GGAGATGCTAGCCCAGTGTACTGCTTTTCGGCAGCTGGCCTTCTGCCTCCGACTTGCACG
TTAATCAGATTAGCCTGTATTTCTTCAGCGAATCTTCCTAATAGCTTCCAGATTCATTGG
CGACAGAGGAAGCCTTTTCAAATCTTCACGTCCCATCGTAGAAATTTGAAACACCGAGTT
GTCGTGCTGATGGTTTTAAGCATCCTTCCATCTTTTTAAGGGATTGCTTCCGCCTCCTTC
CTGCAGGACCTCCCCCAAAGATCCCGCCCAGTGCCAACGTCACACAAAACACTGCCACGT
CGTTCGTTCCATATGAAAGAGTGTTTTGCTTCCGAAACACCTACTCCCTCTGCTCTAGCC
ATGCAACATGAATGCAGATCACACTGATTTTACGTGTTACGAAATGGGAGAACGTATTTA
ATAAAACCTGTTAATTTTTATACTGACAATAAAAATGTTTCTACAGATATTAATGTTAAC
AAGACAAAATAAATGTCACGCAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-196, - strand, RNAz p=0.878156
               

               
               772-880, - strand, RNAz p=0.731387

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-196, - strand, RNAz p=0.878156
               

               
               772-880, - strand, RNAz p=0.731387

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1044, gnl|bosTau2|chr26 (28957810-28958859)
               

               
               5-1044, gnl|Hg17|chr10 (123228884-123227848)
               

               
               5-1044, gnl|Mm7|chr7 (126278559-126277543)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1044, gnl|bosTau2|chr26 (28957810-28958859)
               

               
               5-1044, gnl|Hg17|chr10 (123228884-123227848)
               

               
               5-1044, gnl|Mm7|chr7 (126278559-126277543)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fbs (0.350693)
               

               
               fat (0.294855)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fat (0.294855)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)

	5-196, - strand, RNAz p=0.878156
	772-880, - strand, RNAz p=0.731387

	5-1044, gnl\|bosTau2\|chr26 (28957810-28958859)
	5-1044, gnl\|Hg17\|chr10 (123228884-123227848)
	5-1044, gnl\|Mm7\|chr7 (126278559-126277543)

	fbs (0.350693)
	fat (0.294855)
	aor (0.195274)
	sto (0.179824)
	cki (0.165235)
	cag (0.151194)
	nmm (0.132802)
	thg (0.126791)