Ss1.1-Pig4-TMW8006C01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCATGGGAGCCCCTGTGAAGCTGACAGTGTCCCAGGGGCAGCCGGTGAAGCTCAACT GCAGCGTGGAGGGGATGGAGGAGCCTGAGATACAGTGGGTGAAGGACGGGGCTGTGGTCC AGAGCGTGGATCAGGTGTACATCCCAGTCAGTGAGCAGCACTGGATTGGCTTCCTCAGCC TGAAGTCAGTGGAGCGCTCTGATGCGGGCCGGTACTGGTGCCAGGTGGAGGATGGAGGCG AAACTGAGACCTCCCAGCCAGTGTGGCTCACTGTTGAAGGTGTGCCATTTTTCACTGTGG AGCCAAAAGACCTGGCAGTGCCACCCAATGCCCCTTTCCAACTGTCTTGTGAGGCCGTGG GTCCCCCAGAACCTGTTACCATTGTCTGGTGGAGAGGAGGCACGAAGGTTGGGGGACCTG CTCCTTCTCCTTCTGTGTTAAATGTAACAGGGGTGACCCAGAGCACCGAGTTCTCCTGTG AAGCTCACAACCTAAAAGGCCTGGCTTCCTCTCGCCCAGCCACGGTTCGTCTTCAAGCCC CCTTCAACATCACAGTGACGAAGGGGGCTGTTCACTTCCGGGCAGCGAGAGAAAGGCCTG AGCGCATTGAGGCCACACTGGACAGCTTGGGCATCAGCGATGAGCTGAAGGACAAACTGG AGGATGTGCTCATCCCAGAGCAGCAGTTCACCCTGGGCCGGATGTTGGGCAAAGGAGAGT TTGGTTCAGTGAGGGAAGCCCAGCTGAAGCAGGAGGATGGCTCCTTTGTGAAAGTGGCCG TAAAGATGCTGAAAGCTGACATCATTGCCTCAAGCGACATTGAAGAGTTCCTCAGAGAAG CGGCCTGCATGAAGGAGTTTGACCACCCACACGTGGCCAAGCTTGTTGGGGTGAGCCTCC GGAGCAGGGCCAAAGGCCGTCTCCCCATTCCCATGGTCATCCTGCCTTTCATGAAGCACG GGGACCTGCACGCCTTCCTGCTCGCCTCCCGGATTGGGGAGAACCCCTTTAACCTGCCCC TGCAGACCCTGGTCCGGTTCATGGTGGACATTGCCTGTGGCATGGAGTATCTGAGCTCCC GGAACTTTATCCACCGAGACCTGGCTGCTCGGAACTGCATGCTGGCGGAAGACATGACAG TGTGTGTGGCCGACTTTGGACTGTCCCGGAAGATCTATAGCGGGGACTACTATCGCCAGG GCTGTGCCTCCAAACTGCCCGTCAAGTGGCTGGCCCTGGAGAGCCTGGCTGACAACCTGT ATACTGTGCACAGTGACGTGTGGGCCTTTGGGGTGACCATGTGGGAGATCATGACTCGTG GGCAGACACCATATGCTGGCATCGAGAACGCTGAGATTTACAACTACCTCATCGGCGGGA ACCGCCTGAAACAGCCTCCGGAGTGTATGGAGGACGTGTATGAGCTCATGTACCAGTGCT GGAGCGCCGACCCCAAGCAGCGCCCGAGCTTCACATGTCTGCGGATGGAGCTAGAGAATG TCCTGGGCCGCCTGTCTGTGCTGTCCACCAGTCAGGACCCCTTGTACATCAATCTTGAGG GAGCTCAGGAGCCTGCTGAGGGAGGCAGCCTGGAGCTGCCTGGTGGGGACCAGGCCAGTG GCAGAGCTGGGGATGGCAGTGGCCTAGAGGCAGTGGGGGGCATCCCCAGTGACTATCGGT ACATTCTCAGTCCCGGGGGGCTGGCTGAGCGGCCTGAGCAGGAGGAGCAGCAGCCAGAAA GCCCCGTCAATGAGGCCCAGGGGCTGCTGCTGCTGCAGCAAGGGCTACTACCCCACAGTA GCTGTTAGCCCACAGGCAGAGGGCATCTGGGGCCATGTGGCCGGCTGTGCTGGCTGACTA AGCCCCGTCTGACCCCAGCCCAGGCAGCAAGGCGTGGAGGCTCCTGTGGTAGTCTTCCTA AGCTGTGCTGGAAGCCTGGACTGACCAAATGACCCAATCCCAGTTCTTCCTGCAACCACT CTGTGGCCGGCCTGGCATCAGTTCAGGCCTTGGCTGGGTGGAGGTAGGCCAGGCCTGGTT GTCTAAACCCAGGCAGCTGGCAGAGGGGGTGGTTATGTTTCCGTGGTTACCATGGGTGTG GAGAGCGGCTGGGGGAGGGTAGGTCCAACCCTGTGGGCCCCTGCTCTCCCGGCTGTGCTG CCCCTGCTGCTTTAGTGTATGCATTGAGGCATCTCTGGCCTGGGGGCCCATCTGTGCCTG TGCTTGGGGGTTGAAGGCCCAGGTTTTCCCCTCCTCACAAAGAGATGCCCTTGTATTATT CCCCTTTAGGTGAGAATTGGTAAGGGGTTGGTACAGTCAGGTCCGAAGCCCTGTAGGGGG TGGCAGTGGGACACTCGGGTCTGAGTCATTGTCATCTTCCTGGTTACCCATCCTGCCTAG GCCAGGAGTAAAGTGCAGCTGACCAGGCATAGCAAGGCGTGCTGGATTACACAGGCTACA TTTGCCAAGCTTCTAAAGGTAATGCACTGAGCCTGGCAAGAGGAAGGGGTGCAGTAGGGC TTGCCCAGGAATGAGTGAGGCCAGAGAGGAGTCCAGGAGCCCCTCTTCACGCCCTCCCAC AGTCTGTCTGAGCATGCTACCAAATCCCCAAATATCCTAAGACTAACAAAGGCAGCTGTG TCTGAGTCCGATCCTTCCACGCAGCATCCCCTAGTCCCAACCTTCTCTCTTAAAAAGGAG GCCTTCTTTTGTCCCAGGTCTCCAGAGACGGAGAGAAATTGGCCTGATGGCTGGTGTGTG TGTAGGTGAGGGGGAATTACTGGAGCCTGGACCCCAGCTCTGGATCGGGAGCCTCTGGGA ATGCGTGGGGCAGGCCCTTGCTCTTAGGGACTTTTCCAAGCTGTTAGATGCTGTTTAAAA AATAAATTGAAGACTAAAGACCCGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCATGGGAGCCCCTGTGAAGCTGACAGTGTCCCAGGGGCAGCCGGTGAAGCTCAACT GCAGCGTGGAGGGGATGGAGGAGCCTGAGATACAGTGGGTGAAGGACGGGGCTGTGGTCC AGAGCGTGGATCAGGTGTACATCCCAGTCAGTGAGCAGCACTGGATTGGCTTCCTCAGCC TGAAGTCAGTGGAGCGCTCTGATGCGGGCCGGTACTGGTGCCAGGTGGAGGATGGAGGCG AAACTGAGACCTCCCAGCCAGTGTGGCTCACTGTTGAAGGTGTGCCATTTTTCACTGTGG AGCCAAAAGACCTGGCAGTGCCACCCAATGCCCCTTTCCAACTGTCTTGTGAGGCCGTGG GTCCCCCAGAACCTGTTACCATTGTCTGGTGGAGAGGAGGCACGAAGGTTGGGGGACCTG CTCCTTCTCCTTCTGTGTTAAATGTAACAGGGGTGACCCAGAGCACCGAGTTCTCCTGTG AAGCTCACAACCTAAAAGGCCTGGCTTCCTCTCGCCCAGCCACGGTTCGTCTTCAAGCCC CCTTCAACATCACAGTGACGAAGGGGGCTGTTCACTTCCGGGCAGCGAGAGAAAGGCCTG AGCGCATTGAGGCCACACTGGACAGCTTGGGCATCAGCGATGAGCTGAAGGACAAACTGG AGGATGTGCTCATCCCAGAGCAGCAGTTCACCCTGGGCCGGATGTTGGGCAAAGGAGAGT TTGGTTCAGTGAGGGAAGCCCAGCTGAAGCAGGAGGATGGCTCCTTTGTGAAAGTGGCCG TAAAGATGCTGAAAGCTGACATCATTGCCTCAAGCGACATTGAAGAGTTCCTCAGAGAAG CGGCCTGCATGAAGGAGTTTGACCACCCACACGTGGCCAAGCTTGTTGGGGTGAGCCTCC GGAGCAGGGCCAAAGGCCGTCTCCCCATTCCCATGGTCATCCTGCCTTTCATGAAGCACG GGGACCTGCACGCCTTCCTGCTCGCCTCCCGGATTGGGGAGAACCCCTTTAACCTGCCCC TGCAGACCCTGGTCCGGTTCATGGTGGACATTGCCTGTGGCATGGAGTATCTGAGCTCCC GGAACTTTATCCACCGAGACCTGGCTGCTCGGAACTGCATGCTGGCGGAAGACATGACAG TGTGTGTGGCCGACTTTGGACTGTCCCGGAAGATCTATAGCGGGGACTACTATCGCCAGG GCTGTGCCTCCAAACTGCCCGTCAAGTGGCTGGCCCTGGAGAGCCTGGCTGACAACCTGT ATACTGTGCACAGTGACGTGTGGGCCTTTGGGGTGACCATGTGGGAGATCATGACTCGTG GGCAGACACCATATGCTGGCATCGAGAACGCTGAGATTTACAACTACCTCATCGGCGGGA ACCGCCTGAAACAGCCTCCGGAGTGTATGGAGGACGTGTATGAGCTCATGTACCAGTGCT GGAGCGCCGACCCCAAGCAGCGCCCGAGCTTCACATGTCTGCGGATGGAGCTAGAGAATG TCCTGGGCCGCCTGTCTGTGCTGTCCACCAGTCAGGACCCCTTGTACATCAATCTTGAGG GAGCTCAGGAGCCTGCTGAGGGAGGCAGCCTGGAGCTGCCTGGTGGGGACCAGGCCAGTG GCAGAGCTGGGGATGGCAGTGGCCTAGAGGCAGTGGGGGGCATCCCCAGTGACTATCGGT ACATTCTCAGTCCCGGGGGGCTGGCTGAGCGGCCTGAGCAGGAGGAGCAGCAGCCAGAAA GCCCCGTCAATGAGGCCCAGGGGCTGCTGCTGCTGCAGCAAGGGCTACTACCCCACAGTA GCTGTTAGCCCACAGGCAGAGGGCATCTGGGGCCATGTGGCCGGCTGTGCTGGCTGACTA AGCCCCGTCTGACCCCAGCCCAGGCAGCAAGGCGTGGAGGCTCCTGTGGTAGTCTTCCTA AGCTGTGCTGGAAGCCTGGACTGACCAAATGACCCAATCCCAGTTCTTCCTGCAACCACT CTGTGGCCGGCCTGGCATCAGTTCAGGCCTTGGCTGGGTGGAGGTAGGCCAGGCCTGGTT GTCTAAACCCAGGCAGCTGGCAGAGGGGGTGGTTATGTTTCCGTGGTTACCATGGGTGTG GAGAGCGGCTGGGGGAGGGTAGGTCCAACCCTGTGGGCCCCTGCTCTCCCGGCTGTGCTG CCCCTGCTGCTTTAGTGTATGCATTGAGGCATCTCTGGCCTGGGGGCCCATCTGTGCCTG TGCTTGGGGGTTGAAGGCCCAGGTTTTCCCCTCCTCACAAAGAGATGCCCTTGTATTATT CCCCTTTAGGTGAGAATTGGTAAGGGGTTGGTACAGTCAGGTCCGAAGCCCTGTAGGGGG TGGCAGTGGGACACTCGGGTCTGAGTCATTGTCATCTTCCTGGTTACCCATCCTGCCTAG GCCAGGAGTAAAGTGCAGCTGACCAGGCATAGCAAGGCGTGCTGGATTACACAGGCTACA TTTGCCAAGCTTCTAAAGGTAATGCACTGAGCCTGGCAAGAGGAAGGGGTGCAGTAGGGC TTGCCCAGGAATGAGTGAGGCCAGAGAGGAGTCCAGGAGCCCCTCTTCACGCCCTCCCAC AGTCTGTCTGAGCATGCTACCAAATCCCCAAATATCCTAAGACTAACAAAGGCAGCTGTG TCTGAGTCCGATCCTTCCACGCAGCATCCCCTAGTCCCAACCTTCTCTCTTAAAAAGGAG GCCTTCTTTTGTCCCAGGTCTCCAGAGACGGAGAGAAATTGGCCTGATGGCTGGTGTGTG TGTAGGTGAGGGGGAATTACTGGAGCCTGGACCCCAGCTCTGGATCGGGAGCCTCTGGGA ATGCGTGGGGCAGGCCCTTGCTCTTAGGGACTTTTCCAAGCTGTTAGATGCTGTTTAAAA AATAAATTGAAGACTAAAGACCCGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 40-178, + strand, RNAz p=0.58005 | |
| 318-2745, + strand, RNAz p=0.694129 | |
| 617-736, + strand, RNAz p=0.809968 | |
| 1657-1884, - strand, RNAz p=0.996665 | |
| 1964-2199, - strand, RNAz p=0.99992 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-178, + strand, RNAz p=0.58005 | |
| 318-2745, + strand, RNAz p=0.694129 | |
| 617-736, + strand, RNAz p=0.809968 | |
| 1657-1884, - strand, RNAz p=0.996665 | |
| 1964-2199, - strand, RNAz p=0.99992 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-178, gnl|bosTau2|chr10 (23050503-23050680) | |
| 1-178, gnl|Hg17|chr15 (39640623-39640800) | |
| 1-178, gnl|Mm7|chr2 (119542403-119542580) | |
| 278-451, gnl|bosTau2|chr10 (23051587-23051760) | |
| 278-451, gnl|canFam2|chr30 (11578467-11578645) | |
| 278-451, gnl|dasNov1|scaffold_22567 (51369-51191) | |
| 278-451, gnl|echTel1|scaffold_139914 (315-504) | |
| 278-451, gnl|galGal2|chr5 (22185563-22185741) | |
| 278-451, gnl|hg17|chr15 (39642036-39642214) | |
| 278-451, gnl|Hg17|chr15 (39641997-39642209) | |
| 278-451, gnl|loxAfr1|scaffold_7974 (57837-57659) | |
| 278-451, gnl|mm7|chr2 (119544087-119544265) | |
| 278-451, gnl|Mm7|chr2 (119544087-119544260) | |
| 278-451, gnl|monDom2|scaffold_12 (553546-553369) | |
| 278-451, gnl|oryCun1|scaffold_192910 (4-162) | |
| 278-451, gnl|panTro1|chr16_random (24517978-24518148) | |
| 278-451, gnl|rheMac2|chr7 (19950940-19951118) | |
| 278-451, gnl|rn3|chr3 (106209507-106209685) | |
| 278-451, gnl|tetNig1|chrUn_random (83121247-83121069) | |
| 278-451, gnl|xenTro1|scaffold_33 (2937537-2937360) | |
| 613-736, gnl|bosTau2|chr10 (23059244-23059366) | |
| 613-736, gnl|canFam2|chr30 (11584860-11584979) | |
| 613-736, gnl|danRer3|chr17 (6120735-6120851) | |
| 613-736, gnl|dasNov1|scaffold_22567 (44451-44332) | |
| 613-736, gnl|echTel1|scaffold_230754 (3986-3867) | |
| 613-736, gnl|fr1|chrUn (192933738-192933638) | |
| 613-736, gnl|galGal2|chr5 (22201402-22201503) | |
| 613-736, gnl|hg17|chr15 (39650081-39650200) | |
| 613-736, gnl|Hg17|chr15 (39650088-39650210) | |
| 613-736, gnl|loxAfr1|scaffold_7974 (49760-49644) | |
| 613-736, gnl|mm7|chr2 (119551314-119551432) | |
| 613-736, gnl|Mm7|chr2 (119551321-119551441) | |
| 613-736, gnl|monDom2|scaffold_12 (546458-546351) | |
| 613-736, gnl|oryCun1|scaffold_189143 (84326-84207) | |
| 613-736, gnl|panTro1|chr16 (39621355-39621474) | |
| 613-736, gnl|rheMac2|chr7 (19959234-19959353) | |
| 613-736, gnl|rn3|chr3 (106216726-106216844) | |
| 613-736, gnl|tetNig1|chrUn_random (83377585-83377685) | |
| 613-736, gnl|xenTro1|scaffold_658 (403147-403033) | |
| 888-1010, gnl|bosTau2|chr10 (23060674-23060796) | |
| 888-1010, gnl|Hg17|chr15 (39651932-39652054) | |
| 888-1010, gnl|Mm7|chr2 (119552908-119553030) | |
| 1118-1280, gnl|bosTau2|chr10 (23061486-23061648) | |
| 1118-1280, gnl|Hg17|chr15 (39652795-39652957) | |
| 1118-1280, gnl|Mm7|chr2 (119553649-119553811) | |
| 1418-2901, gnl|bosTau2|chr10 (23064345-23065807) | |
| 1418-2901, gnl|Hg17|chr15 (39657376-39658824) | |
| 1418-2901, gnl|Mm7|chr2 (119557493-119559109) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-178, gnl|bosTau2|chr10 (23050503-23050680) | |
| 1-178, gnl|Hg17|chr15 (39640623-39640800) | |
| 1-178, gnl|Mm7|chr2 (119542403-119542580) | |
| 278-451, gnl|bosTau2|chr10 (23051587-23051760) | |
| 278-451, gnl|canFam2|chr30 (11578467-11578645) | |
| 278-451, gnl|dasNov1|scaffold_22567 (51369-51191) | |
| 278-451, gnl|echTel1|scaffold_139914 (315-504) | |
| 278-451, gnl|galGal2|chr5 (22185563-22185741) | |
| 278-451, gnl|hg17|chr15 (39642036-39642214) | |
| 278-451, gnl|Hg17|chr15 (39641997-39642209) | |
| 278-451, gnl|loxAfr1|scaffold_7974 (57837-57659) | |
| 278-451, gnl|mm7|chr2 (119544087-119544265) | |
| 278-451, gnl|Mm7|chr2 (119544087-119544260) | |
| 278-451, gnl|monDom2|scaffold_12 (553546-553369) | |
| 278-451, gnl|oryCun1|scaffold_192910 (4-162) | |
| 278-451, gnl|panTro1|chr16_random (24517978-24518148) | |
| 278-451, gnl|rheMac2|chr7 (19950940-19951118) | |
| 278-451, gnl|rn3|chr3 (106209507-106209685) | |
| 278-451, gnl|tetNig1|chrUn_random (83121247-83121069) | |
| 278-451, gnl|xenTro1|scaffold_33 (2937537-2937360) | |
| 613-736, gnl|bosTau2|chr10 (23059244-23059366) | |
| 613-736, gnl|canFam2|chr30 (11584860-11584979) | |
| 613-736, gnl|danRer3|chr17 (6120735-6120851) | |
| 613-736, gnl|dasNov1|scaffold_22567 (44451-44332) | |
| 613-736, gnl|echTel1|scaffold_230754 (3986-3867) | |
| 613-736, gnl|fr1|chrUn (192933738-192933638) | |
| 613-736, gnl|galGal2|chr5 (22201402-22201503) | |
| 613-736, gnl|hg17|chr15 (39650081-39650200) | |
| 613-736, gnl|Hg17|chr15 (39650088-39650210) | |
| 613-736, gnl|loxAfr1|scaffold_7974 (49760-49644) | |
| 613-736, gnl|mm7|chr2 (119551314-119551432) | |
| 613-736, gnl|Mm7|chr2 (119551321-119551441) | |
| 613-736, gnl|monDom2|scaffold_12 (546458-546351) | |
| 613-736, gnl|oryCun1|scaffold_189143 (84326-84207) | |
| 613-736, gnl|panTro1|chr16 (39621355-39621474) | |
| 613-736, gnl|rheMac2|chr7 (19959234-19959353) | |
| 613-736, gnl|rn3|chr3 (106216726-106216844) | |
| 613-736, gnl|tetNig1|chrUn_random (83377585-83377685) | |
| 613-736, gnl|xenTro1|scaffold_658 (403147-403033) | |
| 888-1010, gnl|bosTau2|chr10 (23060674-23060796) | |
| 888-1010, gnl|Hg17|chr15 (39651932-39652054) | |
| 888-1010, gnl|Mm7|chr2 (119552908-119553030) | |
| 1118-1280, gnl|bosTau2|chr10 (23061486-23061648) | |
| 1118-1280, gnl|Hg17|chr15 (39652795-39652957) | |
| 1118-1280, gnl|Mm7|chr2 (119553649-119553811) | |
| 1418-2901, gnl|bosTau2|chr10 (23064345-23065807) | |
| 1418-2901, gnl|Hg17|chr15 (39657376-39658824) | |
| 1418-2901, gnl|Mm7|chr2 (119557493-119559109) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| cov (0.264306) | |
| fbs (0.175346) | |
| ski (0.146735) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| cov (0.264306) | |
| fbs (0.175346) | |
| ski (0.146735) | |
| eje (0.0988338) |