Ss1.1-Pig4-TMW8006C03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGGCGCTCCTCGCTACTGACCGCGGCGCCGCACTCTGAGGCGGCCGAGGCGGCGGCC CCGGCGGTCCTGCTCCGCGCACGCGCCCGCGGCCTCCCGGTGCTGACAGCGCGAGCGCGC GGCCCCGCGGGAGCAGCACGAATGTACGACAGCATGTCCACGATGGTGTGCGTAAAGGAG GACAAGTTGGAGAAACTCACGCAGGATGAAATCATCTCTAAGACGAAGCAAGTAATTCAG GGGCTCGAAGCTCTGAAGAATGAGCACAATTCCATTTTACAAAGTTTACTGGAAACGCTC AAGTGTTTGAAGAAGGATGACGAGAGTAACCTGGTGGAGGAGAAGTCGAACATGATCCGG AAGTCGCTGGAGATGCTGGAGCTGGGCCTGAGCGAGGCGCAGGTCATGATGGCTCTGTCC AATCATCTGAATGCCGTTGAGTCAGAGAAGCAGAAACTGCGTGCACAGGTTCGTCGTCTG TGCCAGGAAAATCAGTGGCTGCGAGATGAATTGGCCAACACGCAGCAGAAATTGCAGAAG AGTGAGCAGTCTGTGGCTCAACTGGAGGAAGAAAAGAAGCATCTGGAATTCATGAATCAG TTAAAAAAATACGATGATGACATTTCTCCATCCGAGGACAAAGACACTGACTCCACCAAA GAGCCTCTGGATGACCTTTTCCCAAATGACGACGACGACCCTGGCCAAGGAATCCAGCAG CAGCACAGCAGCGCGGCGGCGGCGGCTCAGCAGGGCGGCTACGAGATCCCGGCGCGGCTG CGCACGCTCCACAACCTGGTCATCCAGTACGCCTCCCAGGGGCGCTACGAGGTCGCCGTG CCCCTCTGCAAGCAGGCCCTGGAGGACCTGGAGAAGACCTCTGGCCACGACCACCCGGAC GTGGCCACCATGCTGAATATCCTGGCCTTGGTGTACAGAGACCAGAATAAGTACAAAGAT GCCGCGAACCTGCTGAACGATGCACTGGCCATCCGTGAAAAAACGCTGGGCAAAGATCAT CCTGCGGTGGCAGCAACTCTGAATAACCTTGCAGTGCTTTACGGCAAGAGAGGAAAGTAC AAAGAAGCCGAGCCGCTGTGTAAACGGGCGCTGGAGATCCGAGAGAAGGTTTTGGGAAAG GATCACCCTGATGTGGCCAAGCAGCTGAATAACCTGGCCCTACTGTGCCAGAACCAGGGC AAGTATGAAGAAGTGGAGTATTACTATCAAAGAGCCCTCGAGATCTACCAGACCAAGCTG GGGCCTGATGACCCCAATGTGGCCAAGACGAAAAACAACCTGGCGTCCTGCTACCTGAAG CAAGGAAAATTCAAGCAAGCAGAAACACTGTACAAAGAGATTCTCACTCGGGCACATGAA AGAGAGTTTGGTTCCGTGGATGATGAAAATAAGCCCATTTGGATGCACGCCGAGGAGAGA GAAGAGTGTAAAGGAAAGCAAAAGGATGGGACGTCTTTCGGAGAGTATGGCGGCTGGTAC AAAGCCTGCAAAGTTGACAGTCCAACTGTTACAACTACGTTAAAAAACCTTGGGGCACTT TACAGACGTCAAGGCAAATTTGAAGCTGCAGAAACGTTAGAAGAAGCGGCCATGAGGTCA CGTAAACAGGGCCTTGACAACGTGCACAAACAGAGAGTAGCTGAGGTGCTGAACGACCCC GAGAACACGGAGAAGCGGAGAAGCCGCGAGAGCCTCAGCGCGGACGTGGTCAAGTACGAG AGCGGCCCAGACGGAGGGGAGGAAATGAGAAAGATGAAGCTCGGGCTGGTTAAATGACTT GCTCAGCGTCGCATGGCCTAGCCGTCCAGTGTGGCGCTCACTCTGTCTCCTGCATGACGG GCGGCACCTCCTCCAGCTTTCCTTCTCTCTCCAGCGCTGACTGCTGTGTTTAGCAACCCT AGGATTCTTGTCAGAGCTGCACCTCTCTGTGACTGGCCATTCCTCTTGGTGCTGCTGTCC TTTTTGGGGGGTCCCTTATCTCTGTATACATGTAGCTTTGCCAGATATGTACTTAGGAAT ATACACTGTATTAATAAAACCATTTACCGTGTAATACATGAGTTTAAAAATTAAGAGCGC TTAGCTGTTCACTTTGGTAAGAGGTAGTTCCGCGTGTCCCCAGGTGTTACTGCAGTGGCA TGATGGTGACTGTGACACTGGCGAGGCTGTCAGCATAGGGCATGTGCTCTCCCGCGCCCT CAGAGGCCTGGCCAGGCCGCCCCGGGCCCCGGGTGCTCCCTCTCGGATCATACGCGCAAG TAGTTTGCTGTGTAGTCTTTGTGTGAAATTCGGGCAGTTCTGCTTTTCTCTACTAATCTC TAAGTGTTCAGTGATTTGTGTACTTGTGTCTTTCTAACTTCTAATAAACTCACTCCAACT GAAAAAAAAAAAGGTGTCTGTCTGCTGAGTAGACCTTCTCTCCCTCTCTGTGGAATGCAG CATTGCCGAAGCTTCTAGAAGGGGTGGGGCAGCTGGGAATTCATCTGAGAATAAAAGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGGCGCTCCTCGCTACTGACCGCGGCGCCGCACTCTGAGGCGGCCGAGGCGGCGGCC CCGGCGGTCCTGCTCCGCGCACGCGCCCGCGGCCTCCCGGTGCTGACAGCGCGAGCGCGC GGCCCCGCGGGAGCAGCACGAATGTACGACAGCATGTCCACGATGGTGTGCGTAAAGGAG GACAAGTTGGAGAAACTCACGCAGGATGAAATCATCTCTAAGACGAAGCAAGTAATTCAG GGGCTCGAAGCTCTGAAGAATGAGCACAATTCCATTTTACAAAGTTTACTGGAAACGCTC AAGTGTTTGAAGAAGGATGACGAGAGTAACCTGGTGGAGGAGAAGTCGAACATGATCCGG AAGTCGCTGGAGATGCTGGAGCTGGGCCTGAGCGAGGCGCAGGTCATGATGGCTCTGTCC AATCATCTGAATGCCGTTGAGTCAGAGAAGCAGAAACTGCGTGCACAGGTTCGTCGTCTG TGCCAGGAAAATCAGTGGCTGCGAGATGAATTGGCCAACACGCAGCAGAAATTGCAGAAG AGTGAGCAGTCTGTGGCTCAACTGGAGGAAGAAAAGAAGCATCTGGAATTCATGAATCAG TTAAAAAAATACGATGATGACATTTCTCCATCCGAGGACAAAGACACTGACTCCACCAAA GAGCCTCTGGATGACCTTTTCCCAAATGACGACGACGACCCTGGCCAAGGAATCCAGCAG CAGCACAGCAGCGCGGCGGCGGCGGCTCAGCAGGGCGGCTACGAGATCCCGGCGCGGCTG CGCACGCTCCACAACCTGGTCATCCAGTACGCCTCCCAGGGGCGCTACGAGGTCGCCGTG CCCCTCTGCAAGCAGGCCCTGGAGGACCTGGAGAAGACCTCTGGCCACGACCACCCGGAC GTGGCCACCATGCTGAATATCCTGGCCTTGGTGTACAGAGACCAGAATAAGTACAAAGAT GCCGCGAACCTGCTGAACGATGCACTGGCCATCCGTGAAAAAACGCTGGGCAAAGATCAT CCTGCGGTGGCAGCAACTCTGAATAACCTTGCAGTGCTTTACGGCAAGAGAGGAAAGTAC AAAGAAGCCGAGCCGCTGTGTAAACGGGCGCTGGAGATCCGAGAGAAGGTTTTGGGAAAG GATCACCCTGATGTGGCCAAGCAGCTGAATAACCTGGCCCTACTGTGCCAGAACCAGGGC AAGTATGAAGAAGTGGAGTATTACTATCAAAGAGCCCTCGAGATCTACCAGACCAAGCTG GGGCCTGATGACCCCAATGTGGCCAAGACGAAAAACAACCTGGCGTCCTGCTACCTGAAG CAAGGAAAATTCAAGCAAGCAGAAACACTGTACAAAGAGATTCTCACTCGGGCACATGAA AGAGAGTTTGGTTCCGTGGATGATGAAAATAAGCCCATTTGGATGCACGCCGAGGAGAGA GAAGAGTGTAAAGGAAAGCAAAAGGATGGGACGTCTTTCGGAGAGTATGGCGGCTGGTAC AAAGCCTGCAAAGTTGACAGTCCAACTGTTACAACTACGTTAAAAAACCTTGGGGCACTT TACAGACGTCAAGGCAAATTTGAAGCTGCAGAAACGTTAGAAGAAGCGGCCATGAGGTCA CGTAAACAGGGCCTTGACAACGTGCACAAACAGAGAGTAGCTGAGGTGCTGAACGACCCC GAGAACACGGAGAAGCGGAGAAGCCGCGAGAGCCTCAGCGCGGACGTGGTCAAGTACGAG AGCGGCCCAGACGGAGGGGAGGAAATGAGAAAGATGAAGCTCGGGCTGGTTAAATGACTT GCTCAGCGTCGCATGGCCTAGCCGTCCAGTGTGGCGCTCACTCTGTCTCCTGCATGACGG GCGGCACCTCCTCCAGCTTTCCTTCTCTCTCCAGCGCTGACTGCTGTGTTTAGCAACCCT AGGATTCTTGTCAGAGCTGCACCTCTCTGTGACTGGCCATTCCTCTTGGTGCTGCTGTCC TTTTTGGGGGGTCCCTTATCTCTGTATACATGTAGCTTTGCCAGATATGTACTTAGGAAT ATACACTGTATTAATAAAACCATTTACCGTGTAATACATGAGTTTAAAAATTAAGAGCGC TTAGCTGTTCACTTTGGTAAGAGGTAGTTCCGCGTGTCCCCAGGTGTTACTGCAGTGGCA TGATGGTGACTGTGACACTGGCGAGGCTGTCAGCATAGGGCATGTGCTCTCCCGCGCCCT CAGAGGCCTGGCCAGGCCGCCCCGGGCCCCGGGTGCTCCCTCTCGGATCATACGCGCAAG TAGTTTGCTGTGTAGTCTTTGTGTGAAATTCGGGCAGTTCTGCTTTTCTCTACTAATCTC TAAGTGTTCAGTGATTTGTGTACTTGTGTCTTTCTAACTTCTAATAAACTCACTCCAACT GAAAAAAAAAAAGGTGTCTGTCTGCTGAGTAGACCTTCTCTCCCTCTCTGTGGAATGCAG CATTGCCGAAGCTTCTAGAAGGGGTGGGGCAGCTGGGAATTCATCTGAGAATAAAAGTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 478-614, + strand, RNAz p=0.841642 | |
| 792-911, - strand, RNAz p=0.95341 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 478-614, + strand, RNAz p=0.841642 | |
| 792-911, - strand, RNAz p=0.95341 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 399-614, gnl|bosTau2|chr18 (38521063-38520848) | |
| 399-614, gnl|Hg17|chr19 (50541638-50541853) | |
| 399-614, gnl|Mm7|chr7 (17080570-17080355) | |
| 713-938, gnl|bosTau2|chr21 (48095404-48095629) | |
| 713-938, gnl|Hg17|chr14 (103198792-103199017) | |
| 713-938, gnl|Mm7|chr12 (109301408-109301633) | |
| 735-936, gnl|bosTau2|chr18 (38520028-38519827) | |
| 735-936, gnl|Hg17|chr19 (50543055-50543256) | |
| 735-936, gnl|Mm7|chr7 (17079449-17079248) | |
| 1127-1303, gnl|bosTau2|chr18 (38518909-38518733) | |
| 1127-1303, gnl|Hg17|chr19 (50544525-50544701) | |
| 1127-1303, gnl|Mm7|chr7 (17078349-17078173) | |
| 1627-1823, gnl|bosTau2|chr21 (48117759-48117955) | |
| 1627-1823, gnl|canFam2|chr8 (74473733-74473939) | |
| 1627-1823, gnl|danRer3|chr13 (13007636-13007817) | |
| 1627-1823, gnl|dasNov1|scaffold_21026 (4205-4413) | |
| 1627-1823, gnl|echTel1|scaffold_289200 (6155-5961) | |
| 1627-1823, gnl|fr1|chrUn (273505309-273505107) | |
| 1627-1823, gnl|galGal2|chr5 (47248297-47248498) | |
| 1627-1823, gnl|hg17|chr14 (103215452-103215655) | |
| 1627-1823, gnl|Hg17|chr14 (103215471-103215674) | |
| 1627-1823, gnl|loxAfr1|scaffold_27717 (30058-30253) | |
| 1627-1823, gnl|mm7|chr12 (109313899-109314099) | |
| 1627-1823, gnl|Mm7|chr12 (109313918-109314116) | |
| 1627-1823, gnl|monDom2|scaffold_6 (88329536-88329739) | |
| 1627-1823, gnl|oryCun1|scaffold_176928 (42847-43044) | |
| 1627-1823, gnl|panTro1|chr15 (103841504-103841707) | |
| 1627-1823, gnl|rheMac2|chr7 (167038568-167038771) | |
| 1627-1823, gnl|rn3|chr6 (136586879-136587079) | |
| 1627-1823, gnl|tetNig1|chr10 (12520404-12520586) | |
| 1627-1823, gnl|xenTro1|scaffold_127 (1680725-1680904) | |
| 1943-2488, gnl|bosTau2|chr21 (48122930-48123471) | |
| 1943-2488, gnl|Hg17|chr14 (103221837-103222402) | |
| 1943-2488, gnl|Mm7|chr12 (109319189-109319720) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 399-614, gnl|bosTau2|chr18 (38521063-38520848) | |
| 399-614, gnl|Hg17|chr19 (50541638-50541853) | |
| 399-614, gnl|Mm7|chr7 (17080570-17080355) | |
| 713-938, gnl|bosTau2|chr21 (48095404-48095629) | |
| 713-938, gnl|Hg17|chr14 (103198792-103199017) | |
| 713-938, gnl|Mm7|chr12 (109301408-109301633) | |
| 735-936, gnl|bosTau2|chr18 (38520028-38519827) | |
| 735-936, gnl|Hg17|chr19 (50543055-50543256) | |
| 735-936, gnl|Mm7|chr7 (17079449-17079248) | |
| 1127-1303, gnl|bosTau2|chr18 (38518909-38518733) | |
| 1127-1303, gnl|Hg17|chr19 (50544525-50544701) | |
| 1127-1303, gnl|Mm7|chr7 (17078349-17078173) | |
| 1627-1823, gnl|bosTau2|chr21 (48117759-48117955) | |
| 1627-1823, gnl|canFam2|chr8 (74473733-74473939) | |
| 1627-1823, gnl|danRer3|chr13 (13007636-13007817) | |
| 1627-1823, gnl|dasNov1|scaffold_21026 (4205-4413) | |
| 1627-1823, gnl|echTel1|scaffold_289200 (6155-5961) | |
| 1627-1823, gnl|fr1|chrUn (273505309-273505107) | |
| 1627-1823, gnl|galGal2|chr5 (47248297-47248498) | |
| 1627-1823, gnl|hg17|chr14 (103215452-103215655) | |
| 1627-1823, gnl|Hg17|chr14 (103215471-103215674) | |
| 1627-1823, gnl|loxAfr1|scaffold_27717 (30058-30253) | |
| 1627-1823, gnl|mm7|chr12 (109313899-109314099) | |
| 1627-1823, gnl|Mm7|chr12 (109313918-109314116) | |
| 1627-1823, gnl|monDom2|scaffold_6 (88329536-88329739) | |
| 1627-1823, gnl|oryCun1|scaffold_176928 (42847-43044) | |
| 1627-1823, gnl|panTro1|chr15 (103841504-103841707) | |
| 1627-1823, gnl|rheMac2|chr7 (167038568-167038771) | |
| 1627-1823, gnl|rn3|chr6 (136586879-136587079) | |
| 1627-1823, gnl|tetNig1|chr10 (12520404-12520586) | |
| 1627-1823, gnl|xenTro1|scaffold_127 (1680725-1680904) | |
| 1943-2488, gnl|bosTau2|chr21 (48122930-48123471) | |
| 1943-2488, gnl|Hg17|chr14 (103221837-103222402) | |
| 1943-2488, gnl|Mm7|chr12 (109319189-109319720) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| fce (0.814775) | |
| fcc (0.791139) | |
| spc (0.680195) | |
| ece (0.45861) | |
| ebs (0.354904) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| cbr (0.127975) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.814775) | |
| fcc (0.791139) | |
| spc (0.680195) | |
| ece (0.45861) | |
| ebs (0.354904) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| cbr (0.127975) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) |