Non-Coding RNA Search

Ss1.1-Pig4-TMW8006D22.3

Sequence:


               
               TCTTTGTAGCAGACACAACCCCGGTATGCGGGCCTTTACTCTGTCTCTTGGCCTCTGAAC
CCATGCCGCTTTGTAAAGCTCCCTCTGCTGTCCCACTGCTCACACCCTCCCTTCGTGCTG
CTAGTTCCTACTCAAAAGTTCATGCAGGACTAATGCTTTTAAAATGAGGTCTAAAAAATA
ATTACTAAGCAAGAGTATTATTTTTTAAACAGAACTGCCTTTTTCTATTCTTTATATAAA
CTTGTGTTGGTCTAAGGCACTATTTTAAAATGTTTTTTAAAAATTTCTCCCATAGCACTT
AAAAGATATTTTGTAAAGACTTTGCTGTAAAGATTTTGTAATAAAATGGTCTAAGGGCTC
CTTCTCCAACATTACCATTTTTTAAAAATGTTTTAAAGGCTAGAAAACAACTTATGTATA
TTCTGTATATGTATAGCAGCACATTTCATTTATGGAAATATGTTCTCAGAATATTTATTT
ACTAATATATTTATCTTAAGCCATGTCTTATGTTGAGAGTGTGACATTGTTGGAATAATC
ATTGAAAATGACTAACATGAGGCCCTGTAAATACATGATAATTGCACACAGATTTTACAT
ATTTGCCGACCAAAAAATGATTTAAAATAAGTTGTAGTCTTCTATGGTTTTGTAACAAAT
TGTACAAATGACTGTAAAAAAAAATACAATTTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTGTAGCAGACACAACCCCGGTATGCGGGCCTTTACTCTGTCTCTTGGCCTCTGAAC
CCATGCCGCTTTGTAAAGCTCCCTCTGCTGTCCCACTGCTCACACCCTCCCTTCGTGCTG
CTAGTTCCTACTCAAAAGTTCATGCAGGACTAATGCTTTTAAAATGAGGTCTAAAAAATA
ATTACTAAGCAAGAGTATTATTTTTTAAACAGAACTGCCTTTTTCTATTCTTTATATAAA
CTTGTGTTGGTCTAAGGCACTATTTTAAAATGTTTTTTAAAAATTTCTCCCATAGCACTT
AAAAGATATTTTGTAAAGACTTTGCTGTAAAGATTTTGTAATAAAATGGTCTAAGGGCTC
CTTCTCCAACATTACCATTTTTTAAAAATGTTTTAAAGGCTAGAAAACAACTTATGTATA
TTCTGTATATGTATAGCAGCACATTTCATTTATGGAAATATGTTCTCAGAATATTTATTT
ACTAATATATTTATCTTAAGCCATGTCTTATGTTGAGAGTGTGACATTGTTGGAATAATC
ATTGAAAATGACTAACATGAGGCCCTGTAAATACATGATAATTGCACACAGATTTTACAT
ATTTGCCGACCAAAAAATGATTTAAAATAAGTTGTAGTCTTCTATGGTTTTGTAACAAAT
TGTACAAATGACTGTAAAAAAAAATACAATTTTATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               33-696, gnl|bosTau2|chr17 (41191762-41192438)
               

               
               33-696, gnl|Hg17|chr22 (27777368-27778018)
               

               
               33-696, gnl|Mm7|chr11 (5228951-5228337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-696, gnl|bosTau2|chr17 (41191762-41192438)
               

               
               33-696, gnl|Hg17|chr22 (27777368-27778018)
               

               
               33-696, gnl|Mm7|chr11 (5228951-5228337)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               ssp (0.13552)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               ssp (0.13552)

	33-696, gnl\|bosTau2\|chr17 (41191762-41192438)
	33-696, gnl\|Hg17\|chr22 (27777368-27778018)
	33-696, gnl\|Mm7\|chr11 (5228951-5228337)

	lyg (0.399308)
	vin (0.332557)
	spc (0.226732)
	fbs (0.175346)
	ssp (0.13552)