Non-Coding RNA Search

Ss1.1-Pig4-TMW8006F06.5

Sequence:


               
               CACCTCTGTGCCAACTGCTGAGTTGACTGGGTTCCAGTTGATGCCTGTTCACGGACCCCT
AGTGGCAGAAGGCCACACCCTCCTCTGGAGTCTGAAATGCCTTGGGTTTGCCCCTGCCGT
CTGTAGCCCATACAAGAGGGGCTCATCACCTGTAGACTGCACAAACGGCACCTTACCACC
AGTAGCCCCATCCTCCAACAGTCTGAGTGTGCACAGAGAAAAATATTTCTATGGAAATCT
GCCCTTCCTCCCAGACAATGGTGCCTTGCTTCTCCTGTGGGCTCAGACCTCCTCCCGAAT
TCCCTTGGCTGTGGTTCTCTGCTCCCCAGCCCTTTGTGCACTGCTCTGTAGGCCCTCAGG
CTGTCTCCACACAGCCTACCCTAGTCCTCTCCTCAGAACTGACCTCTGGACTTGAGTCTC
ATCAGCCAGTCCCCTTCCAAGGGTCAGGCTGTGGTGTCTGGGGCAGTGGTGCAGATGGTC
TGTGCAGCTCTCACTCCGTTTTACTCTCCTCAGTCTAGCTGCTGGGCTTTTCTCCACAAC
TTCATGGTCTCTCTGTCTTGGCTGATCTCCCCTTCAGGTAGGTGGCTTCCCATGGTGTGG
GTTCCTTTCCTCTTTCACAGCTCCCTCTCAGGAGTGCTAGTTCCATCCTGATTCCTTTTC
TCTCTGTGTTTTTTGTTTTTGTTTTTTTTCCCCTTTTTGTTCTATCCAGTTATGTGGAGG
GTTTCTAGCCCTTTTTGGACCTTTAAGGTCTTCTGCCAGCATTCAGTAGATGTTCTGTGC
AAATCGTTCTACATGTAGATGGGTTTTTTTTTTTTTTTTTATGTGTTTGTGGGAGAAGGT
GAACACCATGTATTACTCCTCTGCCATCTTGATCCTTCTCCCAAAAGTGTTAAGTATTCT
AATTTCATTCTTTTACATGTAGCTGTCCATTTTTCCCAGAACCAATTATTGAAGAGGCTT
TCTTTTCCCAAGTATATATTCTTGCCTCCTTTGTTTTGGTTTAGTTGA------------
------------------------------------------------------------
------------------------------------------------------------
TTGATTATTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTCTGTGCCAACTGCTGAGTTGACTGGGTTCCAGTTGATGCCTGTTCACGGACCCCT
AGTGGCAGAAGGCCACACCCTCCTCTGGAGTCTGAAATGCCTTGGGTTTGCCCCTGCCGT
CTGTAGCCCATACAAGAGGGGCTCATCACCTGTAGACTGCACAAACGGCACCTTACCACC
AGTAGCCCCATCCTCCAACAGTCTGAGTGTGCACAGAGAAAAATATTTCTATGGAAATCT
GCCCTTCCTCCCAGACAATGGTGCCTTGCTTCTCCTGTGGGCTCAGACCTCCTCCCGAAT
TCCCTTGGCTGTGGTTCTCTGCTCCCCAGCCCTTTGTGCACTGCTCTGTAGGCCCTCAGG
CTGTCTCCACACAGCCTACCCTAGTCCTCTCCTCAGAACTGACCTCTGGACTTGAGTCTC
ATCAGCCAGTCCCCTTCCAAGGGTCAGGCTGTGGTGTCTGGGGCAGTGGTGCAGATGGTC
TGTGCAGCTCTCACTCCGTTTTACTCTCCTCAGTCTAGCTGCTGGGCTTTTCTCCACAAC
TTCATGGTCTCTCTGTCTTGGCTGATCTCCCCTTCAGGTAGGTGGCTTCCCATGGTGTGG
GTTCCTTTCCTCTTTCACAGCTCCCTCTCAGGAGTGCTAGTTCCATCCTGATTCCTTTTC
TCTCTGTGTTTTTTGTTTTTGTTTTTTTTCCCCTTTTTGTTCTATCCAGTTATGTGGAGG
GTTTCTAGCCCTTTTTGGACCTTTAAGGTCTTCTGCCAGCATTCAGTAGATGTTCTGTGC
AAATCGTTCTACATGTAGATGGGTTTTTTTTTTTTTTTTTATGTGTTTGTGGGAGAAGGT
GAACACCATGTATTACTCCTCTGCCATCTTGATCCTTCTCCCAAAAGTGTTAAGTATTCT
AATTTCATTCTTTTACATGTAGCTGTCCATTTTTCCCAGAACCAATTATTGAAGAGGCTT
TCTTTTCCCAAGTATATATTCTTGCCTCCTTTGTTTTGGTTTAGTTGA------------
------------------------------------------------------------
------------------------------------------------------------
TTGATTATTCCA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               339-873, gnl|bosTau2|chr29 (16018327-16018863)
               


               
               446-807, gnl|bosTau2|chr22 (8872581-8872221)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               339-873, gnl|bosTau2|chr29 (16018327-16018863)
               


               
               446-807, gnl|bosTau2|chr22 (8872581-8872221)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	339-873, gnl\|bosTau2\|chr29 (16018327-16018863)

	446-807, gnl\|bosTau2\|chr22 (8872581-8872221)