Non-Coding RNA Search

Ss1.1-Pig4-TMW8006G04.3

Sequence:


               
               GAAGAGAGATGGCAAGAAGCCTTTCAGTTGTGTCAGTTTGAGGTGGTTGGCCAGGCGTTC
CTTTATCATCAAGTCCGCTGTATGATGGCTGTCCTTTTTCTGATTGGCCAAGGAATGGAG
AAGCCAGAGGTTATTGATGAGCTGCTGAACATAGAGAAAAATCCCCAGAAACCTCAATAC
AGTATGGCTGTAGAATTTCCTCTAGTCTTGTATGACTGTAAGTTTGAAAATATTAAGTGG
ATCTATGACCGGGAAGTTCAGGAGTTCAATGTTACCCACCTTCAGCAATTATGGGCTAAT
CATGCTGTTAAAACTCAGATGTTGTATAGTATGCTACAAGGACTGGACTCTGTGGCAGTA
CCCTGTGGGACAGGACCAAGTATGGATGGAGTGATAGAATGGAGAAATGTTAAGCCTGCT
GTCATAAAGCAGACCAGTGCCTTTGTAGAAGGAGTGAAAATGCGCACGTATAAGCCTTTA
ATGGATCGGCCTAAATGCCAAGGATTAGAAGCCCGGATCCAGCATTTTGTACGTAGGGGA
CGCATTGAGCACCCACATTTATTTCAAGAGGAAGAAACAAAAGCCAAAAGGGACTGTAAT
GACACACTAGAGGAAGAAAATACTATTTTGGAGAAACCAGCAAAGAGAATTTGTGTTGAT
ACAGAAATTAAAAGCATTTAACCATAGAAAACTCATCAAGATCTAGGAGTCATCAAAAGA
CCATCAAAATGGCTCAATTAACGGAGTTCTTGCCTGAACATTCTTTTATTCCTATACAAA
AGAATTAAGAAGAAGGAGCAAAATGCAGTTTTACAGTGGAGATACTATATTTATGTATAC
CTGGAAACCTGTGCCTTGTGTTCAAATTCATTAAAGCCACATCCCCCAAGTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGAGATGGCAAGAAGCCTTTCAGTTGTGTCAGTTTGAGGTGGTTGGCCAGGCGTTC
CTTTATCATCAAGTCCGCTGTATGATGGCTGTCCTTTTTCTGATTGGCCAAGGAATGGAG
AAGCCAGAGGTTATTGATGAGCTGCTGAACATAGAGAAAAATCCCCAGAAACCTCAATAC
AGTATGGCTGTAGAATTTCCTCTAGTCTTGTATGACTGTAAGTTTGAAAATATTAAGTGG
ATCTATGACCGGGAAGTTCAGGAGTTCAATGTTACCCACCTTCAGCAATTATGGGCTAAT
CATGCTGTTAAAACTCAGATGTTGTATAGTATGCTACAAGGACTGGACTCTGTGGCAGTA
CCCTGTGGGACAGGACCAAGTATGGATGGAGTGATAGAATGGAGAAATGTTAAGCCTGCT
GTCATAAAGCAGACCAGTGCCTTTGTAGAAGGAGTGAAAATGCGCACGTATAAGCCTTTA
ATGGATCGGCCTAAATGCCAAGGATTAGAAGCCCGGATCCAGCATTTTGTACGTAGGGGA
CGCATTGAGCACCCACATTTATTTCAAGAGGAAGAAACAAAAGCCAAAAGGGACTGTAAT
GACACACTAGAGGAAGAAAATACTATTTTGGAGAAACCAGCAAAGAGAATTTGTGTTGAT
ACAGAAATTAAAAGCATTTAACCATAGAAAACTCATCAAGATCTAGGAGTCATCAAAAGA
CCATCAAAATGGCTCAATTAACGGAGTTCTTGCCTGAACATTCTTTTATTCCTATACAAA
AGAATTAAGAAGAAGGAGCAAAATGCAGTTTTACAGTGGAGATACTATATTTATGTATAC
CTGGAAACCTGTGCCTTGTGTTCAAATTCATTAAAGCCACATCCCCCAAGTAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34782865|gb|AAH13427.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34782865|gb|AAH13427.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               449-568, + strand, RNAz p=0.693892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-568, + strand, RNAz p=0.693892

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_031307, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_031307, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-182, gnl|bosTau2|chr29 (22147784-22147965)
               

               
               1-182, gnl|canFam2|chr5 (11596778-11596656)
               

               
               1-182, gnl|danRer3|chr18 (95222-95110)
               

               
               1-182, gnl|echTel1|scaffold_186183 (1629-1748)
               

               
               1-182, gnl|fr1|chrUn (62892208-62892320)
               

               
               1-182, gnl|galGal2|chr24 (306520-306634)
               

               
               1-182, gnl|hg17|chr11 (125270320-125270442)
               

               
               1-182, gnl|Hg17|chr11 (125270510-125270329)
               

               
               1-182, gnl|loxAfr1|scaffold_19200 (35723-35604)
               

               
               1-182, gnl|mm7|chr9 (35460666-35460546)
               

               
               1-182, gnl|Mm7|chr9 (35460476-35460657)
               

               
               1-182, gnl|monDom2|scaffold_15 (12677262-12677384)
               

               
               1-182, gnl|oryCun1|scaffold_180904 (8572-8450)
               

               
               1-182, gnl|panTro1|chr9_random (7008284-7008406)
               

               
               1-182, gnl|rheMac2|chr14 (124041016-124041138)
               

               
               1-182, gnl|rn3|chr8 (35359081-35358959)
               

               
               1-182, gnl|tetNig1|chr2_random (455841-455723)
               

               
               1-182, gnl|xenTro1|scaffold_409 (812025-812142)
               


               
               370-892, gnl|bosTau2|chr29 (22148811-22149338)
               

               
               370-892, gnl|Hg17|chr11 (125269204-125268590)
               

               
               370-892, gnl|Mm7|chr9 (35461410-35461945)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr29 (22147784-22147965)
               

               
               1-182, gnl|canFam2|chr5 (11596778-11596656)
               

               
               1-182, gnl|danRer3|chr18 (95222-95110)
               

               
               1-182, gnl|echTel1|scaffold_186183 (1629-1748)
               

               
               1-182, gnl|fr1|chrUn (62892208-62892320)
               

               
               1-182, gnl|galGal2|chr24 (306520-306634)
               

               
               1-182, gnl|hg17|chr11 (125270320-125270442)
               

               
               1-182, gnl|Hg17|chr11 (125270510-125270329)
               

               
               1-182, gnl|loxAfr1|scaffold_19200 (35723-35604)
               

               
               1-182, gnl|mm7|chr9 (35460666-35460546)
               

               
               1-182, gnl|Mm7|chr9 (35460476-35460657)
               

               
               1-182, gnl|monDom2|scaffold_15 (12677262-12677384)
               

               
               1-182, gnl|oryCun1|scaffold_180904 (8572-8450)
               

               
               1-182, gnl|panTro1|chr9_random (7008284-7008406)
               

               
               1-182, gnl|rheMac2|chr14 (124041016-124041138)
               

               
               1-182, gnl|rn3|chr8 (35359081-35358959)
               

               
               1-182, gnl|tetNig1|chr2_random (455841-455723)
               

               
               1-182, gnl|xenTro1|scaffold_409 (812025-812142)
               


               
               370-892, gnl|bosTau2|chr29 (22148811-22149338)
               

               
               370-892, gnl|Hg17|chr11 (125269204-125268590)
               

               
               370-892, gnl|Mm7|chr9 (35461410-35461945)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               lin (0.436808)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	1-182, gnl\|bosTau2\|chr29 (22147784-22147965)
	1-182, gnl\|canFam2\|chr5 (11596778-11596656)
	1-182, gnl\|danRer3\|chr18 (95222-95110)
	1-182, gnl\|echTel1\|scaffold_186183 (1629-1748)
	1-182, gnl\|fr1\|chrUn (62892208-62892320)
	1-182, gnl\|galGal2\|chr24 (306520-306634)
	1-182, gnl\|hg17\|chr11 (125270320-125270442)
	1-182, gnl\|Hg17\|chr11 (125270510-125270329)
	1-182, gnl\|loxAfr1\|scaffold_19200 (35723-35604)
	1-182, gnl\|mm7\|chr9 (35460666-35460546)
	1-182, gnl\|Mm7\|chr9 (35460476-35460657)
	1-182, gnl\|monDom2\|scaffold_15 (12677262-12677384)
	1-182, gnl\|oryCun1\|scaffold_180904 (8572-8450)
	1-182, gnl\|panTro1\|chr9_random (7008284-7008406)
	1-182, gnl\|rheMac2\|chr14 (124041016-124041138)
	1-182, gnl\|rn3\|chr8 (35359081-35358959)
	1-182, gnl\|tetNig1\|chr2_random (455841-455723)
	1-182, gnl\|xenTro1\|scaffold_409 (812025-812142)

	370-892, gnl\|bosTau2\|chr29 (22148811-22149338)
	370-892, gnl\|Hg17\|chr11 (125269204-125268590)
	370-892, gnl\|Mm7\|chr9 (35461410-35461945)

	lin (0.436808)
	vin (0.332557)
	cte (0.29274)
	tra (0.246184)
	cbe (0.239234)
	sag (0.182715)
	fco (0.157208)
	ski (0.146735)
	spl (0.143184)
	ova (0.129132)
	ret (0.128733)
	spc (0.113366)