Ss1.1-Pig4-TMW8006G09.3
|
GACGCATGTATCTTGAAATGCTTGTAAAGAGGTTTCTAACCCACCCTCAAGGGAGTTCTA
GATGTCTCTCCCCCTCCAGCTGGGACTCGGATCCAGAAGGCCAGTGTGGCTCTGCCCTGC
ATCGAAAGACTTTTTGTCAGCCTCTGGGACCCAACAGTCCAGAGTCTGACGAGTAAGAAC
CCTCGGCTGCGAAGGCCCGAAGCACAGGACAAGGACGGACGCTCTGCTGCCTCCTCCCCA
CCCCCAGGGCTCCCCTTCATCAGGCAGAGGGCAGTTTGCAGCATGAAGATGCCTCTCTGA
TCACAGCCTGGAGGCCCCCAGCAGCCAGGAGAGGGTCTTAGAACTCCCCGTGTCACGAGT
GCCACCTCAGCCTGGGGTCCCGCTCCAAGCTCTCCCTCAGGAAGGATGGCCAGGCCTCCT
CACCCAGGGCCCTGCGGCCACAGCGGGGGTTGGGATGGACTGCCTGCCCTGGACTCATCT
CAGTGGCCTGAGCTGCCTGAGCGAGGAAGGGTGATGAGTCCGGAGACACCGTTTCCAAAG
CCTTGGCCAGAGCTCCTGCTGACCTTGCACCAGACTCATCTCCTCCCAGGGGGACGGGAA
GCAGCCTCTGGCAGTTTAGAAATTCGCTGTTTAAAGAAAATCAGCAACCTCGGGCAGTTC
TGCTGCTTCTGGTTCGGGTACAGTTAAAGGCAGCCCTATGGGGCTGGATGGTTCATTTGC
AGCCATAACTCTCTATGCAAGGGATCATCTGGGCCCAGAATGTCCCACAGGCTTTCCTCT
GTCCTGAGTCCCAGCTGGTCTTGGAAGGGTTCTGAGGAAGCAGAAGGAAATGTAGTGCAA
AGACTTGGTAGCTGTTAGCCATCCAGCCTCACTACTGCTGCCGATTCTGGCTGCATTTCT
TCTTGCACCTCTTCCTGCGGCTTCTATGCCCTGCCTTGTGGTACCTTGTTTCCGGGACCT
TCCTCAGAGGGCTGGTGGATGGGCTGCTGGTCATCAGTCTAAACATCAGGGTTTAGGGTG
ATCAGTTCGAAGCTGGCAGGGAGTTGGCAAAGGGATGCTGGCTTGTAACCTTAAATAATG
AGGACAATCCCCCAGGGCCAGGCACTCCCCACCCCCATTTCCTCCAGTGTCCCTTGGGTG
GGCTACATAGGATATGCTGTACGCCTGGTTCCTTCAAGCTCTCCACATACTTTATCAATA
GTTCCATTTAAATTGACTTCAGTGGTGAGACTGTATCCTGTTTGCTTGTTGTGCTCTGGG
GGGAGGGGGGTGGAACCTGTAAGATAGTTACCGCTGGGCACAGGGGAGTGCAGCAGTTCA
AGGCCTAGTAACCCTTTGCTTCATGATTTCATGCTAGGGGTCCTTGGGATTTCGCCTTTT
CGCTGATAGGTGCCATACGCTGCCAGCTAGTTCCCGTCTCCCTGCCGGCCAGGTGCAGGC
AGTGAGGCTGGTGGAGGAATCTGGAGATTCGGTCGCTCTGGCCTGCTGCCCTTTCTTTGG
CAGAGTCCCAAGCACTCAACCGTGCCTCCCAAAGATGCCGGCATCCGGTCCTGAGCTATT
GGCCTCTCCATGTCACCTTTCTCACCAGCTCTGGACAGCAGCCTGTCCTTCTTGTAGCTG
CTGAGATCTCTTCCCCCTTTTATCTTTGTTCCCTAAGGAAAGCAGAGGTGGGGATGAGGG
CAGAGAGGGGAGGACATCAGCTTGTCCCATCTACAGCTCTGTGGCTCCAAGAGACTTCTG
CTTTCTCTTTAGCTTTGAAAAGGGTTATTACCCTGGGCACGGACTGAGTCTCACCTCCCA
ACGGACTTAGCCCTGTGAATTTGCAGTGTTGGGCAGGACAATTTCTGGCACTTGCAAGTC
CCATGATTTCTTTGGTAATACTGAGGGTGGGGGGAGGGACATGAAACCATCTTAGCTTAG
CTTCCTGTCTGTGAATGTCCATATGGTGTGCTGTGTGTTTTAACAAATGATTTACACTTA
CTGTTACTGTAAAAGTGAATTTGGAAATAAAGTTATTACTCTGATTAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACGCATGTATCTTGAAATGCTTGTAAAGAGGTTTCTAACCCACCCTCAAGGGAGTTCTA
GATGTCTCTCCCCCTCCAGCTGGGACTCGGATCCAGAAGGCCAGTGTGGCTCTGCCCTGC
ATCGAAAGACTTTTTGTCAGCCTCTGGGACCCAACAGTCCAGAGTCTGACGAGTAAGAAC
CCTCGGCTGCGAAGGCCCGAAGCACAGGACAAGGACGGACGCTCTGCTGCCTCCTCCCCA
CCCCCAGGGCTCCCCTTCATCAGGCAGAGGGCAGTTTGCAGCATGAAGATGCCTCTCTGA
TCACAGCCTGGAGGCCCCCAGCAGCCAGGAGAGGGTCTTAGAACTCCCCGTGTCACGAGT
GCCACCTCAGCCTGGGGTCCCGCTCCAAGCTCTCCCTCAGGAAGGATGGCCAGGCCTCCT
CACCCAGGGCCCTGCGGCCACAGCGGGGGTTGGGATGGACTGCCTGCCCTGGACTCATCT
CAGTGGCCTGAGCTGCCTGAGCGAGGAAGGGTGATGAGTCCGGAGACACCGTTTCCAAAG
CCTTGGCCAGAGCTCCTGCTGACCTTGCACCAGACTCATCTCCTCCCAGGGGGACGGGAA
GCAGCCTCTGGCAGTTTAGAAATTCGCTGTTTAAAGAAAATCAGCAACCTCGGGCAGTTC
TGCTGCTTCTGGTTCGGGTACAGTTAAAGGCAGCCCTATGGGGCTGGATGGTTCATTTGC
AGCCATAACTCTCTATGCAAGGGATCATCTGGGCCCAGAATGTCCCACAGGCTTTCCTCT
GTCCTGAGTCCCAGCTGGTCTTGGAAGGGTTCTGAGGAAGCAGAAGGAAATGTAGTGCAA
AGACTTGGTAGCTGTTAGCCATCCAGCCTCACTACTGCTGCCGATTCTGGCTGCATTTCT
TCTTGCACCTCTTCCTGCGGCTTCTATGCCCTGCCTTGTGGTACCTTGTTTCCGGGACCT
TCCTCAGAGGGCTGGTGGATGGGCTGCTGGTCATCAGTCTAAACATCAGGGTTTAGGGTG
ATCAGTTCGAAGCTGGCAGGGAGTTGGCAAAGGGATGCTGGCTTGTAACCTTAAATAATG
AGGACAATCCCCCAGGGCCAGGCACTCCCCACCCCCATTTCCTCCAGTGTCCCTTGGGTG
GGCTACATAGGATATGCTGTACGCCTGGTTCCTTCAAGCTCTCCACATACTTTATCAATA
GTTCCATTTAAATTGACTTCAGTGGTGAGACTGTATCCTGTTTGCTTGTTGTGCTCTGGG
GGGAGGGGGGTGGAACCTGTAAGATAGTTACCGCTGGGCACAGGGGAGTGCAGCAGTTCA
AGGCCTAGTAACCCTTTGCTTCATGATTTCATGCTAGGGGTCCTTGGGATTTCGCCTTTT
CGCTGATAGGTGCCATACGCTGCCAGCTAGTTCCCGTCTCCCTGCCGGCCAGGTGCAGGC
AGTGAGGCTGGTGGAGGAATCTGGAGATTCGGTCGCTCTGGCCTGCTGCCCTTTCTTTGG
CAGAGTCCCAAGCACTCAACCGTGCCTCCCAAAGATGCCGGCATCCGGTCCTGAGCTATT
GGCCTCTCCATGTCACCTTTCTCACCAGCTCTGGACAGCAGCCTGTCCTTCTTGTAGCTG
CTGAGATCTCTTCCCCCTTTTATCTTTGTTCCCTAAGGAAAGCAGAGGTGGGGATGAGGG
CAGAGAGGGGAGGACATCAGCTTGTCCCATCTACAGCTCTGTGGCTCCAAGAGACTTCTG
CTTTCTCTTTAGCTTTGAAAAGGGTTATTACCCTGGGCACGGACTGAGTCTCACCTCCCA
ACGGACTTAGCCCTGTGAATTTGCAGTGTTGGGCAGGACAATTTCTGGCACTTGCAAGTC
CCATGATTTCTTTGGTAATACTGAGGGTGGGGGGAGGGACATGAAACCATCTTAGCTTAG
CTTCCTGTCTGTGAATGTCCATATGGTGTGCTGTGTGTTTTAACAAATGATTTACACTTA
CTGTTACTGTAAAAGTGAATTTGGAAATAAAGTTATTACTCTGATTAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-460, gnl|bosTau2|chr19 (41942817-41942354) |
|
1-460, gnl|canFam2|chr9 (12648711-12648457) |
|
1-460, gnl|hg17|chr17 (41459298-41459681) |
|
1-460, gnl|Hg17|chr17 (41459320-41459870) |
|
1-460, gnl|loxAfr1|scaffold_141885 (2401-1992) |
|
1-460, gnl|mm7|chr11 (104439114-104439511) |
|
1-460, gnl|Mm7|chr11 (104439174-104439661) |
|
1-460, gnl|monDom2|scaffold_18 (39201094-39200705) |
|
1-460, gnl|panTro1|chr19 (44834018-44834401) |
|
1-460, gnl|rheMac2|chr16 (56651937-56652321) |
|
1-460, gnl|rn3|chr10 (93521129-93521505) |
| |
|
701-2032, gnl|bosTau2|chr19 (41942151-41940859) |
|
701-2032, gnl|Hg17|chr17 (41460140-41461550) |
|
701-2032, gnl|Mm7|chr11 (104439846-104441135) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-460, gnl|bosTau2|chr19 (41942817-41942354) |
|
1-460, gnl|canFam2|chr9 (12648711-12648457) |
|
1-460, gnl|hg17|chr17 (41459298-41459681) |
|
1-460, gnl|Hg17|chr17 (41459320-41459870) |
|
1-460, gnl|loxAfr1|scaffold_141885 (2401-1992) |
|
1-460, gnl|mm7|chr11 (104439114-104439511) |
|
1-460, gnl|Mm7|chr11 (104439174-104439661) |
|
1-460, gnl|monDom2|scaffold_18 (39201094-39200705) |
|
1-460, gnl|panTro1|chr19 (44834018-44834401) |
|
1-460, gnl|rheMac2|chr16 (56651937-56652321) |
|
1-460, gnl|rn3|chr10 (93521129-93521505) |
| |
|
701-2032, gnl|bosTau2|chr19 (41942151-41940859) |
|
701-2032, gnl|Hg17|chr17 (41460140-41461550) |
|
701-2032, gnl|Mm7|chr11 (104439846-104441135) |
|
ece (1.83444) |
|
ecc (1.72553) |
|
ebs (0.828108) |
|
fcc (0.593354) |
|
hyp (0.42851) |
|
sme (0.305437) |
|
fce (0.271592) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
eru (0.120048) |
|
ece (1.83444) |
|
ecc (1.72553) |
|
ebs (0.828108) |
|
fcc (0.593354) |
|
hyp (0.42851) |
|
sme (0.305437) |
|
fce (0.271592) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
eru (0.120048) |
