Ss1.1-Pig4-TMW8006G16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGAAAGTCCTACCAAGTGCCCATGCTGGCCCAGCTCTCCGTGTTCCGGTGTGGGTCT ACGAGCACCCCCAGTGACTTATGGTACAACTTCATCGAGCTGCCCTACCACGGGGAAAGC ATCAGCATGCGGGTCGCGCTGCCCCGGAGAGCTCCAACCCCCCTCTCAGCCATCATCCCT CACATCAGCACCAAGACCATAGACAGCTGGATGAGCACCATGGTGCCCAAGAGGGTGCAG GTCATCCTGCCCAAGTTCACAGCTGTAGCACAAACAGATTTGAAGGAGCCCCTGAAGGTT CTTGGCGTCACCGAGATGTTTGATCCATCAAAGGCAAATTTTGCAAAAATAACAAGATCA GAAAACCTTCATGTTTCTCACATCTTGCAAAAAGCGAAAATTGAAGTCAGCGAAGACGGA ACGAAAGCTTCCGCAGCAACAACTGCGATTCTGATTGCAAGGTCGTCGCCTCCCTGGTTT ATAGTAGACAGACCTTTTCTATTTTTCATCCGACATAATCCTACAGGTGCTGTTTTATTC ATGGGGCAGATAAACAAACCCTGAAGAGTAAAGCAAAAGGAACCATGCAAAGAAAAGACT CCTTTGCTCAGAAGAAAAGACTCTTTCCCACGTCTTTCATAGTTCTGTTCAATATTTTTG TACGTTACTTTCTTTTTCAAAACTAGGTCTTAGGAACAGAGATCAGTGATGCAGCATTTC TATTCTGGGAGGTATTAAGGGGGAAAAGGGGCAGGATGGCCAGAACACTGTACTGAAGAA TGAATAGAAAGGCTTCAAAATGTCTAAGAGATTCTTTAAACTACTGAGTGGTTACCTAGG TTAACAGCCCTCTTGAGTATTTCCTGTCCAGTTCAGGAGTTCTGTTTTGTTTTGTTTCTA TGTGTGGCTTTTCAGGAAAAAAAATTTTAATCAGTGTGATTTGGGGAAAAAAATAAGGAC ATTTTATGGTAGCGTTTACTTTTTTATGAAAAAGGTATTATTGGCCTTTTAAATTTTTTT TTTTTTTTTTGGTCTCATCCAAAGTCTTGATAGTAAGCCTTATTTTGGGGGTAGAAATAG CAAAATCTCTAGCCTCTTTGTGTGTTTTTTGTTGTTGTTGTTTTATATAATGCATGTATT CACTAAAATAAAATTTAAAAAACTAATGTCTTGCTAGACAAGGTTTGCTGTTGTGCAGTG TGCCTGTCACTACTGGTCTGTACTCTCTGGATTTGCATTTTTGTTATTTTGTACAAAGTA AAAATAAAGTGTTATGAGTAGTTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGAAAGTCCTACCAAGTGCCCATGCTGGCCCAGCTCTCCGTGTTCCGGTGTGGGTCT ACGAGCACCCCCAGTGACTTATGGTACAACTTCATCGAGCTGCCCTACCACGGGGAAAGC ATCAGCATGCGGGTCGCGCTGCCCCGGAGAGCTCCAACCCCCCTCTCAGCCATCATCCCT CACATCAGCACCAAGACCATAGACAGCTGGATGAGCACCATGGTGCCCAAGAGGGTGCAG GTCATCCTGCCCAAGTTCACAGCTGTAGCACAAACAGATTTGAAGGAGCCCCTGAAGGTT CTTGGCGTCACCGAGATGTTTGATCCATCAAAGGCAAATTTTGCAAAAATAACAAGATCA GAAAACCTTCATGTTTCTCACATCTTGCAAAAAGCGAAAATTGAAGTCAGCGAAGACGGA ACGAAAGCTTCCGCAGCAACAACTGCGATTCTGATTGCAAGGTCGTCGCCTCCCTGGTTT ATAGTAGACAGACCTTTTCTATTTTTCATCCGACATAATCCTACAGGTGCTGTTTTATTC ATGGGGCAGATAAACAAACCCTGAAGAGTAAAGCAAAAGGAACCATGCAAAGAAAAGACT CCTTTGCTCAGAAGAAAAGACTCTTTCCCACGTCTTTCATAGTTCTGTTCAATATTTTTG TACGTTACTTTCTTTTTCAAAACTAGGTCTTAGGAACAGAGATCAGTGATGCAGCATTTC TATTCTGGGAGGTATTAAGGGGGAAAAGGGGCAGGATGGCCAGAACACTGTACTGAAGAA TGAATAGAAAGGCTTCAAAATGTCTAAGAGATTCTTTAAACTACTGAGTGGTTACCTAGG TTAACAGCCCTCTTGAGTATTTCCTGTCCAGTTCAGGAGTTCTGTTTTGTTTTGTTTCTA TGTGTGGCTTTTCAGGAAAAAAAATTTTAATCAGTGTGATTTGGGGAAAAAAATAAGGAC ATTTTATGGTAGCGTTTACTTTTTTATGAAAAAGGTATTATTGGCCTTTTAAATTTTTTT TTTTTTTTTTGGTCTCATCCAAAGTCTTGATAGTAAGCCTTATTTTGGGGGTAGAAATAG CAAAATCTCTAGCCTCTTTGTGTGTTTTTTGTTGTTGTTGTTTTATATAATGCATGTATT CACTAAAATAAAATTTAAAAAACTAATGTCTTGCTAGACAAGGTTTGCTGTTGTGCAGTG TGCCTGTCACTACTGGTCTGTACTCTCTGGATTTGCATTTTTGTTATTTTGTACAAAGTA AAAATAAAGTGTTATGAGTAGTTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 556-674, - strand, RNAz p=0.65005 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 556-674, - strand, RNAz p=0.65005 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 55-256, gnl|bosTau2|chr2 (68257016-68256815) | |
| 55-256, gnl|canFam2|chr37 (32709241-32709446) | |
| 55-256, gnl|danRer3|chrNA (110396068-110396273) | |
| 55-256, gnl|dasNov1|scaffold_45655 (1369-1164) | |
| 55-256, gnl|echTel1|scaffold_277610 (21873-21668) | |
| 55-256, gnl|fr1|chrUn (120500585-120500774) | |
| 55-256, gnl|galGal2|chr9 (5335895-5335690) | |
| 55-256, gnl|hg17|chr2 (224674970-224675175) | |
| 55-256, gnl|Hg17|chr2 (224675173-224674972) | |
| 55-256, gnl|loxAfr1|scaffold_21571 (13736-13941) | |
| 55-256, gnl|mm7|chr1 (80017167-80017372) | |
| 55-256, gnl|Mm7|chr1 (80017370-80017169) | |
| 55-256, gnl|monDom2|scaffold_28 (4996161-4996366) | |
| 55-256, gnl|oryCun1|scaffold_205710 (134393-134598) | |
| 55-256, gnl|panTro1|chr13 (115257195-115257400) | |
| 55-256, gnl|rheMac2|chr12 (87865227-87865432) | |
| 55-256, gnl|rn3|chr9 (79283727-79283932) | |
| 55-256, gnl|tetNig1|chr16 (7137637-7137448) | |
| 55-256, gnl|xenTro1|scaffold_907 (116575-116777) | |
| 516-1307, gnl|bosTau2|chr2 (68248182-68247399) | |
| 516-1307, gnl|Hg17|chr2 (224666137-224665375) | |
| 516-1307, gnl|Mm7|chr1 (80009377-80008544) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-256, gnl|bosTau2|chr2 (68257016-68256815) | |
| 55-256, gnl|canFam2|chr37 (32709241-32709446) | |
| 55-256, gnl|danRer3|chrNA (110396068-110396273) | |
| 55-256, gnl|dasNov1|scaffold_45655 (1369-1164) | |
| 55-256, gnl|echTel1|scaffold_277610 (21873-21668) | |
| 55-256, gnl|fr1|chrUn (120500585-120500774) | |
| 55-256, gnl|galGal2|chr9 (5335895-5335690) | |
| 55-256, gnl|hg17|chr2 (224674970-224675175) | |
| 55-256, gnl|Hg17|chr2 (224675173-224674972) | |
| 55-256, gnl|loxAfr1|scaffold_21571 (13736-13941) | |
| 55-256, gnl|mm7|chr1 (80017167-80017372) | |
| 55-256, gnl|Mm7|chr1 (80017370-80017169) | |
| 55-256, gnl|monDom2|scaffold_28 (4996161-4996366) | |
| 55-256, gnl|oryCun1|scaffold_205710 (134393-134598) | |
| 55-256, gnl|panTro1|chr13 (115257195-115257400) | |
| 55-256, gnl|rheMac2|chr12 (87865227-87865432) | |
| 55-256, gnl|rn3|chr9 (79283727-79283932) | |
| 55-256, gnl|tetNig1|chr16 (7137637-7137448) | |
| 55-256, gnl|xenTro1|scaffold_907 (116575-116777) | |
| 516-1307, gnl|bosTau2|chr2 (68248182-68247399) | |
| 516-1307, gnl|Hg17|chr2 (224666137-224665375) | |
| 516-1307, gnl|Mm7|chr1 (80009377-80008544) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ova (2.06612) | |
| eye (0.682012) | |
| elu (0.385356) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (2.06612) | |
| eye (0.682012) | |
| elu (0.385356) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| kid (0.129735) |