Non-Coding RNA Search

Ss1.1-Pig4-TMW8006G20.3

Sequence:


               
               CTGACTTCTCGGCGATTTTTACGATCTAACTTCAAGATAAAACCCCTATCCATTTGACAT
CTAAATGTCATAGCGACTTTTGGGATAGTTTGCTATGGACAAAGGGGGACAAAGTCAAGG
GGTGAGGGGGAAGGAGGGCCCAGGAGAGCCTCCAGGACCCTCGGCAGCCTCCTCACCAGC
TCCCCCTCCCCCCCCAGTCCTGTAAGAAGTTGGGCCAAGCTGGAAGGGATTGACCGGATG
CTCACCACCCTTCTGTCTGTCACTCAGCATCTCTGCAATCCCTCCCACATCTCATGTTTG
TATCGCCGGCTTGCTGCCTACAAGCTTTGGTGTGAGTGAGAATGTACACCTCTGACTGTC
TCACTCTCTCATCGAAGGAAAATGAGCATTGGAGCCAGGCTGGAAGATGGAGCCAAGGTT
GCCTGTCGCGAGATGGAGCCGCAAAGGCAGGGCCTGGGCGCCTGGAGTCCAGCATGAAAG
GAAATAGCGCCTCATCGCTCTTATCTAAGCCCAGAGTGTATTTGCGTCGATTTCACTTGA
AATGATTGGAAAACAGGGAAGGGGACCCACACTCACTTGCAGACACCAACAGTTTCCAGA
AAACTCGGCTCAATTCCTTCACGACAGACTCAACCAGCCAAGGAACTGGCAAGACTCACC
AGCCAACCCGGAGAACACAGACCCAGTTTGTCTTTTGACAACCGAGTGGAACTGCCGGGG
ACGGCGCCTCTCCTGGCCGCCCCCTCCCTTGGCCGAAAAGAAAACCAAATAAACCTGAGC
AGCCGGAAAAAAAGAAATTCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTTCTCGGCGATTTTTACGATCTAACTTCAAGATAAAACCCCTATCCATTTGACAT
CTAAATGTCATAGCGACTTTTGGGATAGTTTGCTATGGACAAAGGGGGACAAAGTCAAGG
GGTGAGGGGGAAGGAGGGCCCAGGAGAGCCTCCAGGACCCTCGGCAGCCTCCTCACCAGC
TCCCCCTCCCCCCCCAGTCCTGTAAGAAGTTGGGCCAAGCTGGAAGGGATTGACCGGATG
CTCACCACCCTTCTGTCTGTCACTCAGCATCTCTGCAATCCCTCCCACATCTCATGTTTG
TATCGCCGGCTTGCTGCCTACAAGCTTTGGTGTGAGTGAGAATGTACACCTCTGACTGTC
TCACTCTCTCATCGAAGGAAAATGAGCATTGGAGCCAGGCTGGAAGATGGAGCCAAGGTT
GCCTGTCGCGAGATGGAGCCGCAAAGGCAGGGCCTGGGCGCCTGGAGTCCAGCATGAAAG
GAAATAGCGCCTCATCGCTCTTATCTAAGCCCAGAGTGTATTTGCGTCGATTTCACTTGA
AATGATTGGAAAACAGGGAAGGGGACCCACACTCACTTGCAGACACCAACAGTTTCCAGA
AAACTCGGCTCAATTCCTTCACGACAGACTCAACCAGCCAAGGAACTGGCAAGACTCACC
AGCCAACCCGGAGAACACAGACCCAGTTTGTCTTTTGACAACCGAGTGGAACTGCCGGGG
ACGGCGCCTCTCCTGGCCGCCCCCTCCCTTGGCCGAAAAGAAAACCAAATAAACCTGAGC
AGCCGGAAAAAAAGAAATTCCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-236, - strand, RNAz p=0.988933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-236, - strand, RNAz p=0.988933

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               104-196, - strand, RNAmicro p=0.99294

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               104-196, - strand, RNAmicro p=0.99294

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-267, gnl|bosTau2|chr19 (31208701-31208970)
               

               
               1-267, gnl|Hg17|chr17 (44022715-44022981)
               

               
               1-267, gnl|Mm7|chr11 (96416013-96415745)
               


               
               510-784, gnl|bosTau2|chr19 (31219651-31219929)
               

               
               510-784, gnl|canFam2|chr9 (28191312-28191766)
               

               
               510-784, gnl|hg17|chr17 (44034247-44034693)
               

               
               510-784, gnl|Hg17|chr17 (44034420-44034693)
               

               
               510-784, gnl|loxAfr1|scaffold_8696 (32064-32506)
               

               
               510-784, gnl|mm7|chr11 (96404604-96404134)
               

               
               510-784, gnl|Mm7|chr11 (96404419-96404132)
               

               
               510-784, gnl|monDom2|scaffold_18 (45596135-45595654)
               

               
               510-784, gnl|panTro1|chr19_random (42983219-42983665)
               

               
               510-784, gnl|rheMac2|chr16 (32831597-32832042)
               

               
               510-784, gnl|rn3|chr10 (85041105-85040647)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr19 (31208701-31208970)
               

               
               1-267, gnl|Hg17|chr17 (44022715-44022981)
               

               
               1-267, gnl|Mm7|chr11 (96416013-96415745)
               


               
               510-784, gnl|bosTau2|chr19 (31219651-31219929)
               

               
               510-784, gnl|canFam2|chr9 (28191312-28191766)
               

               
               510-784, gnl|hg17|chr17 (44034247-44034693)
               

               
               510-784, gnl|Hg17|chr17 (44034420-44034693)
               

               
               510-784, gnl|loxAfr1|scaffold_8696 (32064-32506)
               

               
               510-784, gnl|mm7|chr11 (96404604-96404134)
               

               
               510-784, gnl|Mm7|chr11 (96404419-96404132)
               

               
               510-784, gnl|monDom2|scaffold_18 (45596135-45595654)
               

               
               510-784, gnl|panTro1|chr19_random (42983219-42983665)
               

               
               510-784, gnl|rheMac2|chr16 (32831597-32832042)
               

               
               510-784, gnl|rn3|chr10 (85041105-85040647)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-267, gnl\|bosTau2\|chr19 (31208701-31208970)
	1-267, gnl\|Hg17\|chr17 (44022715-44022981)
	1-267, gnl\|Mm7\|chr11 (96416013-96415745)

	510-784, gnl\|bosTau2\|chr19 (31219651-31219929)
	510-784, gnl\|canFam2\|chr9 (28191312-28191766)
	510-784, gnl\|hg17\|chr17 (44034247-44034693)
	510-784, gnl\|Hg17\|chr17 (44034420-44034693)
	510-784, gnl\|loxAfr1\|scaffold_8696 (32064-32506)
	510-784, gnl\|mm7\|chr11 (96404604-96404134)
	510-784, gnl\|Mm7\|chr11 (96404419-96404132)
	510-784, gnl\|monDom2\|scaffold_18 (45596135-45595654)
	510-784, gnl\|panTro1\|chr19_random (42983219-42983665)
	510-784, gnl\|rheMac2\|chr16 (32831597-32832042)
	510-784, gnl\|rn3\|chr10 (85041105-85040647)