Non-Coding RNA Search

Ss1.1-Pig4-TMW8006H03.3

Sequence:


               
               GACACACACACAGTTTTCATTAAGAAGGGGGAACAATAGGGTTTGCAGTAGAGTATGCTG
CTAACTAGCCATCCCTGCTTGTTTGAAAGAGGAGCAGGGTGGGAGGATTGGGTGGGGTAA
TGCTAGCTGAATTTATAAAGGACCTTTTCTTTTTAAAAAAAAAAATTAAAAAAAATTTTA
TTGACGTCTATAGTTGGCTTACAATGTTGTGTTAATTTCTGCTGTACAGCAAAGAGGCTC
AGTTATACATATATATTCTTTTTCATATTCTTTTCCATTATGATTTATCTCAGGATATTG
AATATAGTTCATTGTGCTATAAACAACAAGTAGGACCTTGTTGTTTATCCCTTCCATACA
TAATAGTCTGCATCTACTAACCCCAAGCTCCCAGTTCATCCCTCCCCTCCAGTCCTCTCC
CTTGGCAACCACAAGTCTGTTCTCTATTTCTGTGAGTCTGTTTCTGTTTTATAGATAAGT
TTATCTGCCATATATTTTAGATTCCACATTATTAACTTTTAAAGAAATCAAATTTGCATC
TCTATTTAAATATATATGTGTCTATCTATGTATATATGTGTGTGTGTGTATGTATATATG
AAGCTCATACTGCTGTTTCCAGCATCGATGCTGGAAATGAATCCTAAAATTGTGAACAGT
GCTTCCATGTCTTGGTTATTGTGAACAGTGCTGTTACAGACATGGAGGTGCATGCGTCTT
TTCAAACTAGTTTTGTCTGGGTATATGCTAAAGGACTTTTTCTTTAAAGATAGGTGAAGA
AAGACTGTAAGCTCTATGGCTGTACCTTGGTTTCTTAAATTTTCTAAGTACTTTGTTTTG
GGAGATTGCTCCTGGGCAGAAAGGAAGGGCTCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACACACACAGTTTTCATTAAGAAGGGGGAACAATAGGGTTTGCAGTAGAGTATGCTG
CTAACTAGCCATCCCTGCTTGTTTGAAAGAGGAGCAGGGTGGGAGGATTGGGTGGGGTAA
TGCTAGCTGAATTTATAAAGGACCTTTTCTTTTTAAAAAAAAAAATTAAAAAAAATTTTA
TTGACGTCTATAGTTGGCTTACAATGTTGTGTTAATTTCTGCTGTACAGCAAAGAGGCTC
AGTTATACATATATATTCTTTTTCATATTCTTTTCCATTATGATTTATCTCAGGATATTG
AATATAGTTCATTGTGCTATAAACAACAAGTAGGACCTTGTTGTTTATCCCTTCCATACA
TAATAGTCTGCATCTACTAACCCCAAGCTCCCAGTTCATCCCTCCCCTCCAGTCCTCTCC
CTTGGCAACCACAAGTCTGTTCTCTATTTCTGTGAGTCTGTTTCTGTTTTATAGATAAGT
TTATCTGCCATATATTTTAGATTCCACATTATTAACTTTTAAAGAAATCAAATTTGCATC
TCTATTTAAATATATATGTGTCTATCTATGTATATATGTGTGTGTGTGTATGTATATATG
AAGCTCATACTGCTGTTTCCAGCATCGATGCTGGAAATGAATCCTAAAATTGTGAACAGT
GCTTCCATGTCTTGGTTATTGTGAACAGTGCTGTTACAGACATGGAGGTGCATGCGTCTT
TTCAAACTAGTTTTGTCTGGGTATATGCTAAAGGACTTTTTCTTTAAAGATAGGTGAAGA
AAGACTGTAAGCTCTATGGCTGTACCTTGGTTTCTTAAATTTTCTAAGTACTTTGTTTTG
GGAGATTGCTCCTGGGCAGAAAGGAAGGGCTCCCTA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               146-509, gnl|bosTau2|chr1 (54206586-54206941)
               

               
               146-509, gnl|hg17|chr3 (187544582-187545260)
               

               
               146-509, gnl|Hg17|chr3 (187545380-187545006)
               

               
               146-509, gnl|panTro1|chr2 (191587464-191588144)
               

               
               146-509, gnl|rheMac2|chr2 (100287244-100286569)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-509, gnl|bosTau2|chr1 (54206586-54206941)
               

               
               146-509, gnl|hg17|chr3 (187544582-187545260)
               

               
               146-509, gnl|Hg17|chr3 (187545380-187545006)
               

               
               146-509, gnl|panTro1|chr2 (191587464-191588144)
               

               
               146-509, gnl|rheMac2|chr2 (100287244-100286569)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	146-509, gnl\|bosTau2\|chr1 (54206586-54206941)
	146-509, gnl\|hg17\|chr3 (187544582-187545260)
	146-509, gnl\|Hg17\|chr3 (187545380-187545006)
	146-509, gnl\|panTro1\|chr2 (191587464-191588144)
	146-509, gnl\|rheMac2\|chr2 (100287244-100286569)