Non-Coding RNA Search

Ss1.1-Pig4-TMW8006I18.3

Sequence:


               
               CAATGAAAACAATAATTACCTGGGTAATTTGACACCTTGCTCTCCTTTCCTAAGATTTAT
TTGTTCAATCCAAGGAAAATTAATTTTGGATTACACTGCCCAGATAATTATAACACCCTT
CTTTTACTTCAGGTGTGTAGAACTGCCTCAGTGTATAAAATAAGTTACTACATTACAGAG
CCAATCAGAAATGATAACCAGATATGACTGTAACCAATATTATTTCATAATTATTAGCTA
CTCAATAACAAAAAAAGAAAGCTCTAACTATATGTATTATGATTCTTCTACCTTACAGGC
TACTTTTGAAGAGGCAAACTATTGAGACTCTGAATGGGAGTTGGGGGAGGGGGCTGGAGA
GGAGCAGATAGACCACAAGGCATTGCCACAGAGGTTATCTCCAGGCTTGGACTGTTCTTA
AGGAAAATGTTCATTCTGCTGCAGCTAACTAGCCTCCATCTTTTTACACCAAATACTATT
CCATGTCATGGAAGTGCTATGCAATAACTCCCAGGTAGCACCTTATACCGCTTAAAAGCC
TTTAAATTTCTAATCTGAAAGTATGACAGTAAAGAAATGTAAACACGTAGGAAAAGAAAA
TTGTAATTACCTGATGAAGTCATCTATGTCCATGGAACGGGCCCGCTTGTCACTAAAACC
TGTGCTGGTTAGGATTTGCTGTATTTTATCTGCTATGCTGAAATCTTCTGGTATTATCTA
TCAATATAAGATTCAGAATAAATGAACAACATATCTTTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGAAAACAATAATTACCTGGGTAATTTGACACCTTGCTCTCCTTTCCTAAGATTTAT
TTGTTCAATCCAAGGAAAATTAATTTTGGATTACACTGCCCAGATAATTATAACACCCTT
CTTTTACTTCAGGTGTGTAGAACTGCCTCAGTGTATAAAATAAGTTACTACATTACAGAG
CCAATCAGAAATGATAACCAGATATGACTGTAACCAATATTATTTCATAATTATTAGCTA
CTCAATAACAAAAAAAGAAAGCTCTAACTATATGTATTATGATTCTTCTACCTTACAGGC
TACTTTTGAAGAGGCAAACTATTGAGACTCTGAATGGGAGTTGGGGGAGGGGGCTGGAGA
GGAGCAGATAGACCACAAGGCATTGCCACAGAGGTTATCTCCAGGCTTGGACTGTTCTTA
AGGAAAATGTTCATTCTGCTGCAGCTAACTAGCCTCCATCTTTTTACACCAAATACTATT
CCATGTCATGGAAGTGCTATGCAATAACTCCCAGGTAGCACCTTATACCGCTTAAAAGCC
TTTAAATTTCTAATCTGAAAGTATGACAGTAAAGAAATGTAAACACGTAGGAAAAGAAAA
TTGTAATTACCTGATGAAGTCATCTATGTCCATGGAACGGGCCCGCTTGTCACTAAAACC
TGTGCTGGTTAGGATTTGCTGTATTTTATCTGCTATGCTGAAATCTTCTGGTATTATCTA
TCAATATAAGATTCAGAATAAATGAACAACATATCTTTAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               10-760, gnl|bosTau2|chr20 (4276594-4275836)
               

               
               10-760, gnl|Hg17|chr5 (61721815-61722609)
               

               
               10-760, gnl|Mm7|chr13 (104087346-104086495)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-760, gnl|bosTau2|chr20 (4276594-4275836)
               

               
               10-760, gnl|Hg17|chr5 (61721815-61722609)
               

               
               10-760, gnl|Mm7|chr13 (104087346-104086495)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	10-760, gnl\|bosTau2\|chr20 (4276594-4275836)
	10-760, gnl\|Hg17\|chr5 (61721815-61722609)
	10-760, gnl\|Mm7\|chr13 (104087346-104086495)

	lin (0.291206)
	aor (0.195274)
	eye (0.170503)
	fhi (0.169578)
	fco (0.157208)
	ski (0.146735)
	hyp (0.142837)
	lnt (0.142308)
	bla (0.124347)
	tra (0.123092)