Non-Coding RNA Search

Ss1.1-Pig4-TMW8006J24.3

Sequence:


               
               CTTCTGCATTGTAATTTTAAAAAATATATCACCTTTTATAGTTGGGTGGAACAGAATTTT
GTCCAGCATCTGTCCAGTTTATTTGCTTTTTAAACATTAGCCTATGGTAGTAATTTATGT
AGAATAAAAGCATTAAAAAGAAGCAAATCATTTGCGCTCTATAATTTGTGGTACAATATC
GCTTATTGTGACTTTGGCATGTATTTTTGCAAACAAAAATGCTGTAAGATTTATACCACT
GACAGTTTTTGCTTTATTTGTATACAGTATATGTATGCACATTTGGAACTGCATTTCTAG
AAACATACTGCAGTAGATTATCTGAGCAGAACATCTGCAACTGAAAAAGTATAGATAAGG
AAATAACTTTAAAGCTGAGTATTTCCTAATTGTGTAAGATCTTACAGCATCTTTGATAAA
CATCTTTCAGCAAAAGTACACATTAGGTTTGTTGAAAATATAGTAGAAAAGCTGATTCTG
GTTATCTCTTTAAGGACGTTTAATTGTATAGACATCATAATGTAACATTGTCGCAACATT
CACAGATTGTAAATTATCTTAATCTTTGTGCAGACTGAAGGAGCACTTAGTATAACCCAA
AAGTGCATTCGCCTAGGACTTTTCAGCTTTTCCCATAGGTAGTTTAACAGGCATTACAAT
TTGTAATTGAAATGTTGCTTTCACTGAAAGTGTCTTGATGTTTCATTTATTTTTAATCGC
CATATAAAAATAGAACTATCTTTTGGGTTTATCATTTTTCTCATGCACAGGCAATACATG
AATTTAAAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGCATTGTAATTTTAAAAAATATATCACCTTTTATAGTTGGGTGGAACAGAATTTT
GTCCAGCATCTGTCCAGTTTATTTGCTTTTTAAACATTAGCCTATGGTAGTAATTTATGT
AGAATAAAAGCATTAAAAAGAAGCAAATCATTTGCGCTCTATAATTTGTGGTACAATATC
GCTTATTGTGACTTTGGCATGTATTTTTGCAAACAAAAATGCTGTAAGATTTATACCACT
GACAGTTTTTGCTTTATTTGTATACAGTATATGTATGCACATTTGGAACTGCATTTCTAG
AAACATACTGCAGTAGATTATCTGAGCAGAACATCTGCAACTGAAAAAGTATAGATAAGG
AAATAACTTTAAAGCTGAGTATTTCCTAATTGTGTAAGATCTTACAGCATCTTTGATAAA
CATCTTTCAGCAAAAGTACACATTAGGTTTGTTGAAAATATAGTAGAAAAGCTGATTCTG
GTTATCTCTTTAAGGACGTTTAATTGTATAGACATCATAATGTAACATTGTCGCAACATT
CACAGATTGTAAATTATCTTAATCTTTGTGCAGACTGAAGGAGCACTTAGTATAACCCAA
AAGTGCATTCGCCTAGGACTTTTCAGCTTTTCCCATAGGTAGTTTAACAGGCATTACAAT
TTGTAATTGAAATGTTGCTTTCACTGAAAGTGTCTTGATGTTTCATTTATTTTTAATCGC
CATATAAAAATAGAACTATCTTTTGGGTTTATCATTTTTCTCATGCACAGGCAATACATG
AATTTAAAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               629-746, + strand, RNAz p=0.725743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               629-746, + strand, RNAz p=0.725743

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_053067, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_053067, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-792, gnl|bosTau2|chr25 (11026579-11025789)
               

               
               8-792, gnl|Hg17|chr9 (83506029-83505238)
               

               
               8-792, gnl|Mm7|chr13 (57272119-57271408)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-792, gnl|bosTau2|chr25 (11026579-11025789)
               

               
               8-792, gnl|Hg17|chr9 (83506029-83505238)
               

               
               8-792, gnl|Mm7|chr13 (57272119-57271408)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               isp (0.150376)
               

               
               liv (0.146284)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	8-792, gnl\|bosTau2\|chr25 (11026579-11025789)
	8-792, gnl\|Hg17\|chr9 (83506029-83505238)
	8-792, gnl\|Mm7\|chr13 (57272119-57271408)

	isp (0.150376)
	liv (0.146284)
	eep (0.122564)
	med (0.116252)
	cbl (0.114797)
	cty (0.10408)