Non-Coding RNA Search

Ss1.1-Pig4-TMW8006M01.3

Sequence:


               
               AGAACCCAGGGTATGCACTGGGGCCAGAGGAGTCTGGTCATTGGGTGAGTGCCCTTGCCT
ATGGCTGGGTCAGGCTGAGGACATCCCACTTGGGTGGTTCATTGCCACTCCAGGTCTCTC
ATTTCTTCTCCCTGAGCTTTGATCTTTGCACTGGGATCCCCTTCACACACTTACCGGATG
ATTCGTTTGGTTGATTACTAAGTCATTGACCTTAGGAAAATTCTCAGTTGTAAAAAGGCT
TTCTCTATGTAAATTATGCTGTTACTTTTTCTATACACAAAGTATATATACCTATAAATA
TTATACATATATATTATATATATATATATATATATATATAAAGACTAATTCTTGTACAGA
CCAACCTGGACCGATGGCCCACATTGTTTTCTCCATGTTTGTGCTGACTGTTGCAGAACG
AGTTCATGGAAGAAGTGGGTTTCATGTTTTCCTTTTGGGGCCACTTCTTTATCTCCTTGT
CCGTCTTGGTCTCTGTCTGCCTGTCTCTCTCTGTCATTGCCAATGTCTTGTTGCTGGAAA
AGAGCAGTCGATTCACATGCCATCCAAGCAGGAAGGCCAGCTGGATGGAGGGTCCACTGT
GTATATTTGTACAGAATCATTTATAAACTTTTCTACACTTCTCAAAAAAGTATTTCTAAT
TTGGCCTGTTGGACAGGTTGTGAGCCTCTGAGCCAGCAAGCCTATTGTTTCTCGTGTTTA
GTGCAATGTTTAGTAAGAATCCAATGTCTGAATTATTTATGCCAATAAAGAATTCGAGAA
TTACTGCATCACATTGCGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACCCAGGGTATGCACTGGGGCCAGAGGAGTCTGGTCATTGGGTGAGTGCCCTTGCCT
ATGGCTGGGTCAGGCTGAGGACATCCCACTTGGGTGGTTCATTGCCACTCCAGGTCTCTC
ATTTCTTCTCCCTGAGCTTTGATCTTTGCACTGGGATCCCCTTCACACACTTACCGGATG
ATTCGTTTGGTTGATTACTAAGTCATTGACCTTAGGAAAATTCTCAGTTGTAAAAAGGCT
TTCTCTATGTAAATTATGCTGTTACTTTTTCTATACACAAAGTATATATACCTATAAATA
TTATACATATATATTATATATATATATATATATATATATAAAGACTAATTCTTGTACAGA
CCAACCTGGACCGATGGCCCACATTGTTTTCTCCATGTTTGTGCTGACTGTTGCAGAACG
AGTTCATGGAAGAAGTGGGTTTCATGTTTTCCTTTTGGGGCCACTTCTTTATCTCCTTGT
CCGTCTTGGTCTCTGTCTGCCTGTCTCTCTCTGTCATTGCCAATGTCTTGTTGCTGGAAA
AGAGCAGTCGATTCACATGCCATCCAAGCAGGAAGGCCAGCTGGATGGAGGGTCCACTGT
GTATATTTGTACAGAATCATTTATAAACTTTTCTACACTTCTCAAAAAAGTATTTCTAAT
TTGGCCTGTTGGACAGGTTGTGAGCCTCTGAGCCAGCAAGCCTATTGTTTCTCGTGTTTA
GTGCAATGTTTAGTAAGAATCCAATGTCTGAATTATTTATGCCAATAAAGAATTCGAGAA
TTACTGCATCACATTGCGCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-397, - strand, RNAz p=0.984212

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-397, - strand, RNAz p=0.984212

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr17 (32929036-32929861)
               

               
               1-804, gnl|Hg17|chr12 (116354395-116353557)
               

               
               1-804, gnl|Mm7|chr5 (117002659-117004011)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr17 (32929036-32929861)
               

               
               1-804, gnl|Hg17|chr12 (116354395-116353557)
               

               
               1-804, gnl|Mm7|chr5 (117002659-117004011)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	1-804, gnl\|bosTau2\|chr17 (32929036-32929861)
	1-804, gnl\|Hg17\|chr12 (116354395-116353557)
	1-804, gnl\|Mm7\|chr5 (117002659-117004011)