Non-Coding RNA Search

Ss1.1-Pig4-TMW8006M16.3

Sequence:


               
               GAAGATGAAGCAGAACAGAAAAGGGTCAGAAAGAAGAGAGAAAGTAAGAAGAGAGATATG
GGGACTCCAGCAGCCTCTGGGACAGAGCCAGCTCCCTTGCCTGAAGCTCTTGGAAGAGGC
CAGAGGAAGAACGCTTCCACCTTCTTCAAGGAACTCAGAGAAGAGCTGCACAGGGCTCCT
GCTGGGACCCCCAGTGACCTCCCTCCAGGACCTTTTGGCTCTGATGCTGCAGAATCCCCC
TCCTCCCTGAAGAACAAGAGGGAGCCAGTGGAAGTGGTAGAATTTCACAGCAGAAATACA
AAAAGAAAACAGAAGCCAGATCAAGATGAGCACATAAAGACCAAAACTAGTATCCTTGAG
AAAGATGTGAATGTACAAGAATTTAACTTGGAAAAGGCCCGTTTAGAAGTGCACCGATTT
GGGATCACAGGTTACGGAAAAGGAAAGGAAAGAGTCCTGGAGCAGGAACGTGCCATTATG
CTGGGCGCTAAGCCTCCCAAAAATCGCCAGAGCCACAGCAACGCAGGATCCGAGCCGCGT
CTGCAATCTATACCACAGCTCACGGCAACACCGGATCGTTAACCCACTGAGCAAGGGCAG
GGATCGAACCCGCAACCTCATGGTTCCTAGTCGAATTCGTTAACCACTGCGCCATGATGG
GAACTCCAGAGACTGCTTTTTTATTAGGGAAAAATAGTCAATTCAAAATAATGTTTCTAG
CTGTGGAAGTGTCTCTTTCCACGTTGGGCCAATTGCAAGGCGAAGATAAAGTAAAACTGA
GAAGAGTATTTAAGTATTTGTTCTCCAGCAAGATTCACTTGAGTTTCACCTTCACTGGTG
TTTTATGCATTTGCTCATAAACATTTCATAGTTCTACTCATTTGTAGAACTGAGAATGTG
ATGTGTTGGTTGTTTTGTGGGGAAAAGCAGTTTCAATTTTCAGCTTACCTAAAGTGTATA
AAATCTACTTTGTAAGAAGTGTAAATAAAATACAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATGAAGCAGAACAGAAAAGGGTCAGAAAGAAGAGAGAAAGTAAGAAGAGAGATATG
GGGACTCCAGCAGCCTCTGGGACAGAGCCAGCTCCCTTGCCTGAAGCTCTTGGAAGAGGC
CAGAGGAAGAACGCTTCCACCTTCTTCAAGGAACTCAGAGAAGAGCTGCACAGGGCTCCT
GCTGGGACCCCCAGTGACCTCCCTCCAGGACCTTTTGGCTCTGATGCTGCAGAATCCCCC
TCCTCCCTGAAGAACAAGAGGGAGCCAGTGGAAGTGGTAGAATTTCACAGCAGAAATACA
AAAAGAAAACAGAAGCCAGATCAAGATGAGCACATAAAGACCAAAACTAGTATCCTTGAG
AAAGATGTGAATGTACAAGAATTTAACTTGGAAAAGGCCCGTTTAGAAGTGCACCGATTT
GGGATCACAGGTTACGGAAAAGGAAAGGAAAGAGTCCTGGAGCAGGAACGTGCCATTATG
CTGGGCGCTAAGCCTCCCAAAAATCGCCAGAGCCACAGCAACGCAGGATCCGAGCCGCGT
CTGCAATCTATACCACAGCTCACGGCAACACCGGATCGTTAACCCACTGAGCAAGGGCAG
GGATCGAACCCGCAACCTCATGGTTCCTAGTCGAATTCGTTAACCACTGCGCCATGATGG
GAACTCCAGAGACTGCTTTTTTATTAGGGAAAAATAGTCAATTCAAAATAATGTTTCTAG
CTGTGGAAGTGTCTCTTTCCACGTTGGGCCAATTGCAAGGCGAAGATAAAGTAAAACTGA
GAAGAGTATTTAAGTATTTGTTCTCCAGCAAGATTCACTTGAGTTTCACCTTCACTGGTG
TTTTATGCATTTGCTCATAAACATTTCATAGTTCTACTCATTTGTAGAACTGAGAATGTG
ATGTGTTGGTTGTTTTGTGGGGAAAAGCAGTTTCAATTTTCAGCTTACCTAAAGTGTATA
AAATCTACTTTGTAAGAAGTGTAAATAAAATACAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22477334|gb|AAH36800.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22477334|gb|AAH36800.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.734627
               

               
               57-254, - strand, RNAz p=0.945767

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.734627
               

               
               57-254, - strand, RNAz p=0.945767

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-339, gnl|bosTau2|chr28 (1934059-1934394)
               

               
               1-339, gnl|canFam2|chr4 (11190957-11190564)
               

               
               1-339, gnl|dasNov1|scaffold_755 (62135-62531)
               

               
               1-339, gnl|echTel1|scaffold_310384 (46665-46271)
               

               
               1-339, gnl|hg17|chr1 (227681332-227681714)
               

               
               1-339, gnl|Hg17|chr1 (227681661-227681338)
               

               
               1-339, gnl|loxAfr1|scaffold_16536 (59343-59729)
               

               
               1-339, gnl|mm7|chr8 (123448338-123448717)
               

               
               1-339, gnl|Mm7|chr8 (123448661-123448344)
               

               
               1-339, gnl|monDom2|scaffold_13 (59867111-59867514)
               

               
               1-339, gnl|oryCun1|scaffold_207629 (39040-39439)
               

               
               1-339, gnl|panTro1|chr1 (211537185-211537570)
               

               
               1-339, gnl|rheMac2|chr1 (225713444-225713050)
               

               
               1-339, gnl|rn3|chr19 (55036528-55036918)
               


               
               886-996, gnl|bosTau2|chr28 (1961482-1961597)
               

               
               886-996, gnl|Hg17|chr1 (227666362-227666255)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-339, gnl|bosTau2|chr28 (1934059-1934394)
               

               
               1-339, gnl|canFam2|chr4 (11190957-11190564)
               

               
               1-339, gnl|dasNov1|scaffold_755 (62135-62531)
               

               
               1-339, gnl|echTel1|scaffold_310384 (46665-46271)
               

               
               1-339, gnl|hg17|chr1 (227681332-227681714)
               

               
               1-339, gnl|Hg17|chr1 (227681661-227681338)
               

               
               1-339, gnl|loxAfr1|scaffold_16536 (59343-59729)
               

               
               1-339, gnl|mm7|chr8 (123448338-123448717)
               

               
               1-339, gnl|Mm7|chr8 (123448661-123448344)
               

               
               1-339, gnl|monDom2|scaffold_13 (59867111-59867514)
               

               
               1-339, gnl|oryCun1|scaffold_207629 (39040-39439)
               

               
               1-339, gnl|panTro1|chr1 (211537185-211537570)
               

               
               1-339, gnl|rheMac2|chr1 (225713444-225713050)
               

               
               1-339, gnl|rn3|chr19 (55036528-55036918)
               


               
               886-996, gnl|bosTau2|chr28 (1961482-1961597)
               

               
               886-996, gnl|Hg17|chr1 (227666362-227666255)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	1-119, - strand, RNAz p=0.734627
	57-254, - strand, RNAz p=0.945767

	1-339, gnl\|bosTau2\|chr28 (1934059-1934394)
	1-339, gnl\|canFam2\|chr4 (11190957-11190564)
	1-339, gnl\|dasNov1\|scaffold_755 (62135-62531)
	1-339, gnl\|echTel1\|scaffold_310384 (46665-46271)
	1-339, gnl\|hg17\|chr1 (227681332-227681714)
	1-339, gnl\|Hg17\|chr1 (227681661-227681338)
	1-339, gnl\|loxAfr1\|scaffold_16536 (59343-59729)
	1-339, gnl\|mm7\|chr8 (123448338-123448717)
	1-339, gnl\|Mm7\|chr8 (123448661-123448344)
	1-339, gnl\|monDom2\|scaffold_13 (59867111-59867514)
	1-339, gnl\|oryCun1\|scaffold_207629 (39040-39439)
	1-339, gnl\|panTro1\|chr1 (211537185-211537570)
	1-339, gnl\|rheMac2\|chr1 (225713444-225713050)
	1-339, gnl\|rn3\|chr19 (55036528-55036918)

	886-996, gnl\|bosTau2\|chr28 (1961482-1961597)
	886-996, gnl\|Hg17\|chr1 (227666362-227666255)

	cov (0.132153)
	thg (0.126791)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)