Non-Coding RNA Search

Ss1.1-Pig4-TMW8006N01.3

Sequence:


               
               AAATCATTGTGGTGTGATCTGGCAGGAGAGTAGAAGTCAGCAGACAGGATCTCTGTGGCA
GGTGGTAGCATAATCGATCTCGTTAGAAGTCAGCAGGTTACGAACACACTGGGTTTAAAA
CCTCACAGTCATTTCTCTTAATTGCCCTTAATATTTTGACATATAGGGATACACACATTT
AAAGACTATTTCTTCTCAGTTTTTCAGATATCGCCATACTGAACCTCATTCTAAACTGGT
GCTGTGGGTAGTCTCCCTCTCCCCTCCCCTTTTAGTTTCAGGAAAGGTTTCCTTCATGGA
AAAGCACTTTTCATTTGAGAATTTCACATTTAAAATAAGCCAAAAGCCTGATGTTCACAT
TGTGCTTTTAAACCCCGTAACAGCTGAATACAGCATATTTAGTCTCCTTCAAAATTCCCT
CCCCTTTTCAGTAGAGGATAAATATGGTGACCGCAGCTGTTATGTTGGGAAGAGGAGTGG
GAATACCCCCAAAATAAGATTCCAATGAAGAAAAAGTCTTGTACTGTTCCCTTCCAGCCC
AGCCAAGTCTGTCATACATTATTGCCATGAGTAGACTCCTTCAGAATCCGCAAAGAAGAG
GAAGGCTTGCATGTCAGGAGTTCTTCCATCAGTTGGGGGGGGGGGGGCAGTACCAGGGAG
AAGTGGGAAAGTCCGCGAAGGGGAGAAGAAAGAACACACACAATTGGCCTTAAAATAGCT
CGCATTCTCCCAAAAGCTCATAGTAAAAGAAAATGACAGATCGTGGTCAGCAGATTATTT
TATCAAATTGGTAATGTAACATTTCTTTAAGCTCCGTTTTGCAGAGACCACCACTTAGAG
AATCAAGAATTCCTGTTTTGATACTTCTAAGTTAAAATAACTATATGTTACAGTTTATCT
GGTACTTCATTTTTCTTAACTAAAATTACTTTTTACTTTAAGCTTGAATAAAATTTTCAT
TGGTAACTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCATTGTGGTGTGATCTGGCAGGAGAGTAGAAGTCAGCAGACAGGATCTCTGTGGCA
GGTGGTAGCATAATCGATCTCGTTAGAAGTCAGCAGGTTACGAACACACTGGGTTTAAAA
CCTCACAGTCATTTCTCTTAATTGCCCTTAATATTTTGACATATAGGGATACACACATTT
AAAGACTATTTCTTCTCAGTTTTTCAGATATCGCCATACTGAACCTCATTCTAAACTGGT
GCTGTGGGTAGTCTCCCTCTCCCCTCCCCTTTTAGTTTCAGGAAAGGTTTCCTTCATGGA
AAAGCACTTTTCATTTGAGAATTTCACATTTAAAATAAGCCAAAAGCCTGATGTTCACAT
TGTGCTTTTAAACCCCGTAACAGCTGAATACAGCATATTTAGTCTCCTTCAAAATTCCCT
CCCCTTTTCAGTAGAGGATAAATATGGTGACCGCAGCTGTTATGTTGGGAAGAGGAGTGG
GAATACCCCCAAAATAAGATTCCAATGAAGAAAAAGTCTTGTACTGTTCCCTTCCAGCCC
AGCCAAGTCTGTCATACATTATTGCCATGAGTAGACTCCTTCAGAATCCGCAAAGAAGAG
GAAGGCTTGCATGTCAGGAGTTCTTCCATCAGTTGGGGGGGGGGGGGCAGTACCAGGGAG
AAGTGGGAAAGTCCGCGAAGGGGAGAAGAAAGAACACACACAATTGGCCTTAAAATAGCT
CGCATTCTCCCAAAAGCTCATAGTAAAAGAAAATGACAGATCGTGGTCAGCAGATTATTT
TATCAAATTGGTAATGTAACATTTCTTTAAGCTCCGTTTTGCAGAGACCACCACTTAGAG
AATCAAGAATTCCTGTTTTGATACTTCTAAGTTAAAATAACTATATGTTACAGTTTATCT
GGTACTTCATTTTTCTTAACTAAAATTACTTTTTACTTTAAGCTTGAATAAAATTTTCAT
TGGTAACTGTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               306-499, - strand, RNAz p=0.990819

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-499, - strand, RNAz p=0.990819

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-971, gnl|bosTau2|chr16 (13840784-13841772)
               

               
               2-971, gnl|Hg17|chr1 (220883247-220882280)
               

               
               2-971, gnl|Mm7|chr1 (181156433-181155523)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-971, gnl|bosTau2|chr16 (13840784-13841772)
               

               
               2-971, gnl|Hg17|chr1 (220883247-220882280)
               

               
               2-971, gnl|Mm7|chr1 (181156433-181155523)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               vin (0.332557)
               

               
               nms (0.213858)
               

               
               fty (0.17584)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               nms (0.213858)
               

               
               fty (0.17584)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	2-971, gnl\|bosTau2\|chr16 (13840784-13841772)
	2-971, gnl\|Hg17\|chr1 (220883247-220882280)
	2-971, gnl\|Mm7\|chr1 (181156433-181155523)

	vin (0.332557)
	nms (0.213858)
	fty (0.17584)
	pty (0.142714)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)