Non-Coding RNA Search

Ss1.1-Pig4-TMW8006O08.5

Sequence:


               
               TGAACCAGCTGGAATTCAGACTTCAGCATAATGTTATAAGACCATTTATCACAAGGTCAG
CTTTGCAGATAGCTTGTTACACATGACAAGTTGTTAAAGAAAATTTGTGAGTTAGAATAT
GAAGGAAAATGCTTTCCTGGTAAAATTGACTTGTTTATGAAGGGACTGCAACATAAACAC
TCTGCAGTTAATTACAGACTAATTAAAATGCAGTTCATTTAGTTATTCCTTTAAGATGAG
CTGCTCTTTTTTTCTCCAAAGTATATTATCTCAAAACTCGTTCTGTTCTCAGAAGCCCTG
GTCATCACATTCCCGCTGGGCACTTCCTGGCGTGGGTCCGCCAGGCCCTCGTCTTTAGCA
CCTTCTAAGCCAGTAGTCTTGCGAGATAGCGGGACGTTGGCTGTTGTGCAGCCCTGTGTC
CAGGAGGAAGCTGGAGCCTCTTGGTTTCTGAGACCAGCTCTGGGTGATGGTTTTACTTGC
CTTCTATGCCACTGAATATTTTATTGACCAGATCACAAAGGTGTTCTTAAGTCATAAATG
TGAGGACTCTAGTATTTGTCTAAAAAAAAATCACCTCATGGTGTGCACTATGAAGTTATC
TTCAGCCTTCCAGTTTATACCCTTTCAGTCCCAGCTAATGAACTGACCTCATACTTTGGT
TTCTGGGAACATTGGTTTCCAATTTAATTTCACTGAAATTTGCTGCTGACATGTTGAGTT
CTTTAAAAATATCTCAATATCTGTCTTTTCTCCTGTCTTAGAACAGACCTAACTAGTGAA
TGTACTAATGAAAATGCATCTATTTCAGAGCTGACTTTAAAAGTTTAGTTTTTTTACTTC
ATAAACTGTGAATATGAGTATGCCAGCAGCATACAATGTAACTGTTATAGTATTTAAATA
AATTTCACTTTCTCTGTAAGTCCAGGCCTCTTCCAAGTCTGTATCAATTTGTTTTGAAAT
ACAGTCTCTACCTATGGACATAATAACAAAAACGCCTTTTCGCATGATTAAAAAATCATG
ACTCTGATTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACCAGCTGGAATTCAGACTTCAGCATAATGTTATAAGACCATTTATCACAAGGTCAG
CTTTGCAGATAGCTTGTTACACATGACAAGTTGTTAAAGAAAATTTGTGAGTTAGAATAT
GAAGGAAAATGCTTTCCTGGTAAAATTGACTTGTTTATGAAGGGACTGCAACATAAACAC
TCTGCAGTTAATTACAGACTAATTAAAATGCAGTTCATTTAGTTATTCCTTTAAGATGAG
CTGCTCTTTTTTTCTCCAAAGTATATTATCTCAAAACTCGTTCTGTTCTCAGAAGCCCTG
GTCATCACATTCCCGCTGGGCACTTCCTGGCGTGGGTCCGCCAGGCCCTCGTCTTTAGCA
CCTTCTAAGCCAGTAGTCTTGCGAGATAGCGGGACGTTGGCTGTTGTGCAGCCCTGTGTC
CAGGAGGAAGCTGGAGCCTCTTGGTTTCTGAGACCAGCTCTGGGTGATGGTTTTACTTGC
CTTCTATGCCACTGAATATTTTATTGACCAGATCACAAAGGTGTTCTTAAGTCATAAATG
TGAGGACTCTAGTATTTGTCTAAAAAAAAATCACCTCATGGTGTGCACTATGAAGTTATC
TTCAGCCTTCCAGTTTATACCCTTTCAGTCCCAGCTAATGAACTGACCTCATACTTTGGT
TTCTGGGAACATTGGTTTCCAATTTAATTTCACTGAAATTTGCTGCTGACATGTTGAGTT
CTTTAAAAATATCTCAATATCTGTCTTTTCTCCTGTCTTAGAACAGACCTAACTAGTGAA
TGTACTAATGAAAATGCATCTATTTCAGAGCTGACTTTAAAAGTTTAGTTTTTTTACTTC
ATAAACTGTGAATATGAGTATGCCAGCAGCATACAATGTAACTGTTATAGTATTTAAATA
AATTTCACTTTCTCTGTAAGTCCAGGCCTCTTCCAAGTCTGTATCAATTTGTTTTGAAAT
ACAGTCTCTACCTATGGACATAATAACAAAAACGCCTTTTCGCATGATTAAAAAATCATG
ACTCTGATTACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               463-1031, gnl|bosTau2|chr11 (32993487-32992924)
               

               
               463-1031, gnl|Hg17|chr2 (108583710-108584288)
               

               
               463-1031, gnl|Mm7|chr10 (57823147-57823709)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               463-1031, gnl|bosTau2|chr11 (32993487-32992924)
               

               
               463-1031, gnl|Hg17|chr2 (108583710-108584288)
               

               
               463-1031, gnl|Mm7|chr10 (57823147-57823709)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cte (0.87822)
               

               
               sag (0.548145)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               sag (0.548145)
               

               
               sin (0.349895)
               

               
               eye (0.341006)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	463-1031, gnl\|bosTau2\|chr11 (32993487-32992924)
	463-1031, gnl\|Hg17\|chr2 (108583710-108584288)
	463-1031, gnl\|Mm7\|chr10 (57823147-57823709)

	cte (0.87822)
	sag (0.548145)
	sin (0.349895)
	eye (0.341006)
	lyg (0.266205)
	mgp (0.230681)
	hea (0.204499)
	sto (0.179824)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	ski (0.146735)
	lin (0.145603)
	ova (0.129132)
	jej (0.0989218)
	ldo (0.0970026)