Non-Coding RNA Search

Ss1.1-Pig4-TMW8006P11.5

Sequence:


               
               TGGAGAGGCACATACAGCATCAGCTGGGTGGATTTTTAGAGAAAACTTTGAGCAAACTGC
CAAACTTAGAATCCCTGAGGCCCCGGAGCCAGTTGATGCTGACTCGAAAGGCTGAAGCTG
CATTGAGAAAAGCTGCCAGTGAGACGGCCACTTCAGAAGGACTCAGCAACTTCCTGAGGA
GTGAGTTGGTTTCGGAAGAATTGGAGAGATTTACAGCCAGTGGTATAGCCAACTTGAGGT
GCAGTGAACGAGCATTTGATTCAGACGTCACTGACAGTAGTTCCGGAGGAGAGTCTGATG
TCGAAGAGGAAGAATTGACCAGAGCGGATCCTGAGCAGCGCCATGTACCCCTGAGGCGCA
GGTCAAAATGGAGGTGGGCTGCAGACCGAGCAGCTATTGTCAGCCGCTGGAACTGGCTTC
AGGCTCATGTTTCTGACCTGGAATATCGAATTCGGCAGCAAACAGATATTTACAAACAGA
TACGTGCTAATAAGGGTTTGATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGAGGCACATACAGCATCAGCTGGGTGGATTTTTAGAGAAAACTTTGAGCAAACTGC
CAAACTTAGAATCCCTGAGGCCCCGGAGCCAGTTGATGCTGACTCGAAAGGCTGAAGCTG
CATTGAGAAAAGCTGCCAGTGAGACGGCCACTTCAGAAGGACTCAGCAACTTCCTGAGGA
GTGAGTTGGTTTCGGAAGAATTGGAGAGATTTACAGCCAGTGGTATAGCCAACTTGAGGT
GCAGTGAACGAGCATTTGATTCAGACGTCACTGACAGTAGTTCCGGAGGAGAGTCTGATG
TCGAAGAGGAAGAATTGACCAGAGCGGATCCTGAGCAGCGCCATGTACCCCTGAGGCGCA
GGTCAAAATGGAGGTGGGCTGCAGACCGAGCAGCTATTGTCAGCCGCTGGAACTGGCTTC
AGGCTCATGTTTCTGACCTGGAATATCGAATTCGGCAGCAAACAGATATTTACAAACAGA
TACGTGCTAATAAGGGTTTGATAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-199, + strand, RNAz p=0.653222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, + strand, RNAz p=0.653222

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               149-241, + strand, RNAmicro p=0.963538

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               149-241, + strand, RNAmicro p=0.963538

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-353, gnl|bosTau2|chr19 (41814250-41814602)
               

               
               1-353, gnl|canFam2|chr9 (12508961-12508497)
               

               
               1-353, gnl|danRer3|chr3 (15356412-15356840)
               

               
               1-353, gnl|dasNov1|scaffold_3987 (63769-63305)
               

               
               1-353, gnl|echTel1|scaffold_312153 (50635-50171)
               

               
               1-353, gnl|fr1|chrUn (184768270-184767815)
               

               
               1-353, gnl|galGal2|chr27 (1340105-1339641)
               

               
               1-353, gnl|hg17|chr17 (41603989-41604453)
               

               
               1-353, gnl|Hg17|chr17 (41604349-41603997)
               

               
               1-353, gnl|mm7|chr11 (104532954-104533418)
               

               
               1-353, gnl|Mm7|chr11 (104533314-104532962)
               

               
               1-353, gnl|monDom2|scaffold_18 (39058681-39058217)
               

               
               1-353, gnl|oryCun1|scaffold_204091 (163008-163472)
               

               
               1-353, gnl|panTro1|chr19 (44978329-44978793)
               

               
               1-353, gnl|rheMac2|chr16 (56797651-56798115)
               

               
               1-353, gnl|rn3|chr10 (93613339-93613803)
               

               
               1-353, gnl|tetNig1|chr2 (1690189-1690643)
               

               
               1-353, gnl|xenTro1|scaffold_221 (1422999-1422549)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr19 (41814250-41814602)
               

               
               1-353, gnl|canFam2|chr9 (12508961-12508497)
               

               
               1-353, gnl|danRer3|chr3 (15356412-15356840)
               

               
               1-353, gnl|dasNov1|scaffold_3987 (63769-63305)
               

               
               1-353, gnl|echTel1|scaffold_312153 (50635-50171)
               

               
               1-353, gnl|fr1|chrUn (184768270-184767815)
               

               
               1-353, gnl|galGal2|chr27 (1340105-1339641)
               

               
               1-353, gnl|hg17|chr17 (41603989-41604453)
               

               
               1-353, gnl|Hg17|chr17 (41604349-41603997)
               

               
               1-353, gnl|mm7|chr11 (104532954-104533418)
               

               
               1-353, gnl|Mm7|chr11 (104533314-104532962)
               

               
               1-353, gnl|monDom2|scaffold_18 (39058681-39058217)
               

               
               1-353, gnl|oryCun1|scaffold_204091 (163008-163472)
               

               
               1-353, gnl|panTro1|chr19 (44978329-44978793)
               

               
               1-353, gnl|rheMac2|chr16 (56797651-56798115)
               

               
               1-353, gnl|rn3|chr10 (93613339-93613803)
               

               
               1-353, gnl|tetNig1|chr2 (1690189-1690643)
               

               
               1-353, gnl|xenTro1|scaffold_221 (1422999-1422549)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	1-353, gnl\|bosTau2\|chr19 (41814250-41814602)
	1-353, gnl\|canFam2\|chr9 (12508961-12508497)
	1-353, gnl\|danRer3\|chr3 (15356412-15356840)
	1-353, gnl\|dasNov1\|scaffold_3987 (63769-63305)
	1-353, gnl\|echTel1\|scaffold_312153 (50635-50171)
	1-353, gnl\|fr1\|chrUn (184768270-184767815)
	1-353, gnl\|galGal2\|chr27 (1340105-1339641)
	1-353, gnl\|hg17\|chr17 (41603989-41604453)
	1-353, gnl\|Hg17\|chr17 (41604349-41603997)
	1-353, gnl\|mm7\|chr11 (104532954-104533418)
	1-353, gnl\|Mm7\|chr11 (104533314-104532962)
	1-353, gnl\|monDom2\|scaffold_18 (39058681-39058217)
	1-353, gnl\|oryCun1\|scaffold_204091 (163008-163472)
	1-353, gnl\|panTro1\|chr19 (44978329-44978793)
	1-353, gnl\|rheMac2\|chr16 (56797651-56798115)
	1-353, gnl\|rn3\|chr10 (93613339-93613803)
	1-353, gnl\|tetNig1\|chr2 (1690189-1690643)
	1-353, gnl\|xenTro1\|scaffold_221 (1422999-1422549)