Non-Coding RNA Search

Ss1.1-Pig4-TMW8007B02.5

Sequence:


               
               TATTTATTATTTTTGTAGTTTTAGGGCCACACCTGTGACACATGGAGGTTCCCAGGCTAG
GGGTCCAATCAAAGCTGTAGCTGCTGGCCTACGCCACGGCAAGGCCAGATCCAAGCCGCA
TCTGCAGTCTACACCACAGCTCATGGCAGTGCCAGACTCTTAACCCACTGAGCAAGGCCA
GGGATCTAACCTCATGTTTCCTAGTCAGATTCATTTCCGCCATGCCACGACAGGAACTCC
CTAAATTTATTCCTACTGCATTAACTTTTTATCCCTTTACCCCACTGTACCTTGTATAGA
GATATCATGTAACGTGATGACTTACAATAACTGATGTATGGTTTGGATAATTGTTTCTAA
CGTTCTATACTTCTTGTGATTCTCTACGGCAGTGGTTTTGCCAGCTTTAGTTTAGTTCAG
CTAGTTTTGTCAACTTTAACAGACCAGTGTTCCAAGTTCCCAGGTGGATAACGCTGTGAT
ACTAGAGACTTTCATAATTTTGGTTAGTGGTCTAGCAGGACTTTGTAGCACCCATCTCTT
TCTATTTTGTGGTACTTTATGTGATGGCCCCACCTGTTCATTTGCACAGAAACGAGAGCA
GAAAAAGGAGCTGGGCCATGTCAATGGACTGGTGGACAAATCTGGCAAACGGACTACATC
CCCCAGCAGTGACACTGACTTGTTGGACAGATCAGCTAGCAAAACTGAACTCAAGGCTAT
TGCCCATGCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTATTATTTTTGTAGTTTTAGGGCCACACCTGTGACACATGGAGGTTCCCAGGCTAG
GGGTCCAATCAAAGCTGTAGCTGCTGGCCTACGCCACGGCAAGGCCAGATCCAAGCCGCA
TCTGCAGTCTACACCACAGCTCATGGCAGTGCCAGACTCTTAACCCACTGAGCAAGGCCA
GGGATCTAACCTCATGTTTCCTAGTCAGATTCATTTCCGCCATGCCACGACAGGAACTCC
CTAAATTTATTCCTACTGCATTAACTTTTTATCCCTTTACCCCACTGTACCTTGTATAGA
GATATCATGTAACGTGATGACTTACAATAACTGATGTATGGTTTGGATAATTGTTTCTAA
CGTTCTATACTTCTTGTGATTCTCTACGGCAGTGGTTTTGCCAGCTTTAGTTTAGTTCAG
CTAGTTTTGTCAACTTTAACAGACCAGTGTTCCAAGTTCCCAGGTGGATAACGCTGTGAT
ACTAGAGACTTTCATAATTTTGGTTAGTGGTCTAGCAGGACTTTGTAGCACCCATCTCTT
TCTATTTTGTGGTACTTTATGTGATGGCCCCACCTGTTCATTTGCACAGAAACGAGAGCA
GAAAAAGGAGCTGGGCCATGTCAATGGACTGGTGGACAAATCTGGCAAACGGACTACATC
CCCCAGCAGTGACACTGACTTGTTGGACAGATCAGCTAGCAAAACTGAACTCAAGGCTAT
TGCCCATGCCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               594-713, - strand, RNAz p=0.658107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-713, - strand, RNAz p=0.658107

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               351-732, gnl|bosTau2|chr19 (13835892-13835512)
               

               
               351-732, gnl|Hg17|chr17 (24275691-24275304)
               

               
               351-732, gnl|Mm7|chr11 (78090596-78091118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               351-732, gnl|bosTau2|chr19 (13835892-13835512)
               

               
               351-732, gnl|Hg17|chr17 (24275691-24275304)
               

               
               351-732, gnl|Mm7|chr11 (78090596-78091118)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	351-732, gnl\|bosTau2\|chr19 (13835892-13835512)
	351-732, gnl\|Hg17\|chr17 (24275691-24275304)
	351-732, gnl\|Mm7\|chr11 (78090596-78091118)