Non-Coding RNA Search

Ss1.1-Pig4-TMW8007J05.5

Sequence:


               
               GCGGAAAGCCGCGCCGAGTCGCCGGGGACCTCGGTGAACCATGTTGAGCCCTGCCAACGG
GGAGCAGATCCACCTGGTGAACTATGTGGAGGACTACCTGGACTCCATCGAGTCTCTGCC
TTTCGATCTGCAGAGAAACGTCTCGCTGATGCGGGAGATCGACGCGAAATACCAAGAAAT
CCTGAAGGAACTGGATGAGTATTATGAGAAGTTCAAGCGGGAGGCGGACAGCGCACAGAA
GAGGAGGGTGCTGCACTGCATCCAGCGGGCCCTGATCCGGAGCCAGGAGCTGGGTGACGA
GAAGATCCAGATCGTGAGTCAGATGGTGGAGCTGGTGGAAAACCGGACCAGGCAGGTGGA
CAGCCACGTGGAACTCTTTGAGGCACACCAAGAGGTCAGTGACACCACTGGCCACAGCAA
AGCTGGCCAGGATAAGTCCAAAAATGAGACAATCACACAGCCAGAGAAGCCCAACAACAA
GCGGTCCCGGCGGCAGCGCAACAATGAGAATCGGGAGAACGCAGCTAATAACCACGACCA
CGATGACGTCACCTCCGGCACCCCCAAGGAGAAGAAGGCGAAGGCCTCCAAGAAGAAGAA
GCGCTCCAAGGCCAAGGCGGAGCGGGAGGCGTCGCCCGCAGACCTCCCCATCGACCCCAA
CGAGCCCACGTACTGTCTTTGCAATCAGGTCTCCTATGGAGAGATGATCGGCTGCGACAA
CGACGAGTGCCCCATCGAGTGGTTCCACTTCTCCTGCGTGGGGCTGAGCCACAAGCCCAA
GGGCAAGTGGTACTGCCCCCGGTGCCGCGGGGAGAACGAGAAGACCATGGACAAGGCCCT
GGAGAAGTCCAAAAAGGAGAGGGCCTACAACAGGTAGTGGTGGGCCCGGCTGACCGGGGA
GAGCGGACAGGCTGGTATTTATTGCATCGCCACCTGGACAGCGGGCGCAGGGGCTGTACG
GCGTGGGCCTCTGCAGACCTGGGAAAAGGGGCCGCTCCTTCTGCAGGGATGGCCGAGTTC
TCTGCGTTTTCATTGGTGCACACGTGTAACAAGCAAGGGGTCTGTGGATCAGCATTTTAG
AAACTGCAAATACAGTTTGAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAAAGCCGCGCCGAGTCGCCGGGGACCTCGGTGAACCATGTTGAGCCCTGCCAACGG
GGAGCAGATCCACCTGGTGAACTATGTGGAGGACTACCTGGACTCCATCGAGTCTCTGCC
TTTCGATCTGCAGAGAAACGTCTCGCTGATGCGGGAGATCGACGCGAAATACCAAGAAAT
CCTGAAGGAACTGGATGAGTATTATGAGAAGTTCAAGCGGGAGGCGGACAGCGCACAGAA
GAGGAGGGTGCTGCACTGCATCCAGCGGGCCCTGATCCGGAGCCAGGAGCTGGGTGACGA
GAAGATCCAGATCGTGAGTCAGATGGTGGAGCTGGTGGAAAACCGGACCAGGCAGGTGGA
CAGCCACGTGGAACTCTTTGAGGCACACCAAGAGGTCAGTGACACCACTGGCCACAGCAA
AGCTGGCCAGGATAAGTCCAAAAATGAGACAATCACACAGCCAGAGAAGCCCAACAACAA
GCGGTCCCGGCGGCAGCGCAACAATGAGAATCGGGAGAACGCAGCTAATAACCACGACCA
CGATGACGTCACCTCCGGCACCCCCAAGGAGAAGAAGGCGAAGGCCTCCAAGAAGAAGAA
GCGCTCCAAGGCCAAGGCGGAGCGGGAGGCGTCGCCCGCAGACCTCCCCATCGACCCCAA
CGAGCCCACGTACTGTCTTTGCAATCAGGTCTCCTATGGAGAGATGATCGGCTGCGACAA
CGACGAGTGCCCCATCGAGTGGTTCCACTTCTCCTGCGTGGGGCTGAGCCACAAGCCCAA
GGGCAAGTGGTACTGCCCCCGGTGCCGCGGGGAGAACGAGAAGACCATGGACAAGGCCCT
GGAGAAGTCCAAAAAGGAGAGGGCCTACAACAGGTAGTGGTGGGCCCGGCTGACCGGGGA
GAGCGGACAGGCTGGTATTTATTGCATCGCCACCTGGACAGCGGGCGCAGGGGCTGTACG
GCGTGGGCCTCTGCAGACCTGGGAAAAGGGGCCGCTCCTTCTGCAGGGATGGCCGAGTTC
TCTGCGTTTTCATTGGTGCACACGTGTAACAAGCAAGGGGTCTGTGGATCAGCATTTTAG
AAACTGCAAATACAGTTTGAATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RK29_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RK29_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               334-450, + strand, RNAz p=0.51348

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-450, + strand, RNAz p=0.51348

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-1102, gnl|bosTau2|chr12 (45892103-45893043)
               

               
               175-1102, gnl|Hg17|chr13 (110169575-110170518)
               

               
               175-1102, gnl|Mm7|chr8 (11529427-11530353)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-1102, gnl|bosTau2|chr12 (45892103-45893043)
               

               
               175-1102, gnl|Hg17|chr13 (110169575-110170518)
               

               
               175-1102, gnl|Mm7|chr8 (11529427-11530353)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               hlv (0.417769)
               

               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	175-1102, gnl\|bosTau2\|chr12 (45892103-45893043)
	175-1102, gnl\|Hg17\|chr13 (110169575-110170518)
	175-1102, gnl\|Mm7\|chr8 (11529427-11530353)

	hlv (0.417769)
	cga (0.279096)
	nms (0.213858)
	fty (0.17584)
	mcp (0.170648)
	csp (0.161186)
	cag (0.151194)
	nmm (0.132802)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)
	cty (0.10408)