Ss1.1-Pig4-TMW8007M04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCGGCGGAAGTGATCGCTGCGTGAATCGTGGGTGTGATGACCGCGCTTCGGCTCTAT CTAAGGCTGCTGCGATCATCCTCCAAATCCATGGCTCAGAGCCCAGTCAAGGGCGGGCCC CCCTCCAGGGGTCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCTCTATCTAAGGC TGCTGCGATCATCCTCCAAATCCATGGCTCAGAGCCCAGTCAAGGGCGGGCCCCCCTCCA GGGGTCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGCAACATTGGCCTGC ACTAGCCCAAATCTCGGAAACTTACTGGATATGATGTACCAGAATCCAACACGATGGTCC TACACATTCCAGACATTTTCTTTTATGAGCCGCCTGAAAGTACAGTTGGAGCCCTTCCCT GAGAAGCTCTTAGAGGCCGAGAAGGCGGTACGGATCTTTGAGAGGTCTGTGTACAGTGAC AGGTATATCTTTGCAAAGAATCTTTTTGAAAATGGTTCCCTCAGTGACGTGGAGTGGCAT ATCTATCAGGACGGGCATTCTTTTCTCCTGCAGGAGTTTGCCAGCCGGCTCAGATTACAT GGCTTCGTCTACCTCCAGGCTGCTCCCCAGGTTTGTTTGAAGAGGCTACGCCGGAGGGCC AGGGAAGAGGAGAGAGGAATTGAGCTGGCGTATCTTGAGCAGCTTCATGATCAGCACGAA GCCTGGCTTGTCCACAAGACAACCCCGCTCCACTCTGAGGCTCTGCTCAACGTTCCAGTG CTGGTGTTGGATGTCAATGATGATTTTTCTGAAGAAGTAACCAGACAAGAAGAGCTCATG AAAAGGGTAAACACCTTTGTAAAGAATCTGTAAACGATGGAGTTCCCTGGTGGCCTACCG GTTAAGGATTCGGCATTGTCACTGCCCTGGCACAGGTTTAATCCCTGGCCCAGGAACTTC TGCATGCCTTGGGTACAACCCCCCGCCCAAAAAAGAATCTGTACCCAGTATGATGTGTTC TAGCTGTGATCTGGGCTCTCTGACTTTGTGAAGCCAGAAAGATACAAGTCACCTGCCTTT CCACCCCTACTCTAGCTCCTTTTACCCCTAGAGGGCTCTGACATGCAGGGCTTAGCTTTC TATTATCCTTAGACCCTGCCTTTGTCTTCTTTTATATCTAAGGACTTCTTAAATAAAGTC TTAAGTTTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCGGCGGAAGTGATCGCTGCGTGAATCGTGGGTGTGATGACCGCGCTTCGGCTCTAT CTAAGGCTGCTGCGATCATCCTCCAAATCCATGGCTCAGAGCCCAGTCAAGGGCGGGCCC CCCTCCAGGGGTCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCTCTATCTAAGGC TGCTGCGATCATCCTCCAAATCCATGGCTCAGAGCCCAGTCAAGGGCGGGCCCCCCTCCA GGGGTCTGCACGCGGGGCGCGGGCCCCGAAGGCTCTCCATCGAAGGCAACATTGGCCTGC ACTAGCCCAAATCTCGGAAACTTACTGGATATGATGTACCAGAATCCAACACGATGGTCC TACACATTCCAGACATTTTCTTTTATGAGCCGCCTGAAAGTACAGTTGGAGCCCTTCCCT GAGAAGCTCTTAGAGGCCGAGAAGGCGGTACGGATCTTTGAGAGGTCTGTGTACAGTGAC AGGTATATCTTTGCAAAGAATCTTTTTGAAAATGGTTCCCTCAGTGACGTGGAGTGGCAT ATCTATCAGGACGGGCATTCTTTTCTCCTGCAGGAGTTTGCCAGCCGGCTCAGATTACAT GGCTTCGTCTACCTCCAGGCTGCTCCCCAGGTTTGTTTGAAGAGGCTACGCCGGAGGGCC AGGGAAGAGGAGAGAGGAATTGAGCTGGCGTATCTTGAGCAGCTTCATGATCAGCACGAA GCCTGGCTTGTCCACAAGACAACCCCGCTCCACTCTGAGGCTCTGCTCAACGTTCCAGTG CTGGTGTTGGATGTCAATGATGATTTTTCTGAAGAAGTAACCAGACAAGAAGAGCTCATG AAAAGGGTAAACACCTTTGTAAAGAATCTGTAAACGATGGAGTTCCCTGGTGGCCTACCG GTTAAGGATTCGGCATTGTCACTGCCCTGGCACAGGTTTAATCCCTGGCCCAGGAACTTC TGCATGCCTTGGGTACAACCCCCCGCCCAAAAAAGAATCTGTACCCAGTATGATGTGTTC TAGCTGTGATCTGGGCTCTCTGACTTTGTGAAGCCAGAAAGATACAAGTCACCTGCCTTT CCACCCCTACTCTAGCTCCTTTTACCCCTAGAGGGCTCTGACATGCAGGGCTTAGCTTTC TATTATCCTTAGACCCTGCCTTTGTCTTCTTTTATATCTAAGGACTTCTTAAATAAAGTC TTAAGTTTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1084-1212, - strand, RNAz p=0.893295 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1084-1212, - strand, RNAz p=0.893295 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-168, gnl|bosTau2|chr11 (9349963-9350130) | |
| 1-168, gnl|canFam2|chr17 (52208455-52207983) | |
| 1-168, gnl|dasNov1|scaffold_86565 (7233-7691) | |
| 1-168, gnl|echTel1|scaffold_314690 (81466-81995) | |
| 1-168, gnl|hg17|chr2 (74065594-74066118) | |
| 1-168, gnl|Hg17|chr2 (74065654-74065821) | |
| 1-168, gnl|mm7|chr6 (83532367-83531828) | |
| 1-168, gnl|Mm7|chr6 (83532313-83532146) | |
| 1-168, gnl|oryCun1|scaffold_199376 (108996-109533) | |
| 1-168, gnl|panTro1|chr12 (76470556-76471080) | |
| 1-168, gnl|rheMac2|chr13 (74143134-74143655) | |
| 1-168, gnl|rn3|chr4 (117969902-117969365) | |
| 294-485, gnl|bosTau2|chr11 (9373269-9373460) | |
| 294-485, gnl|canFam2|chr17 (52185793-52185561) | |
| 294-485, gnl|danRer3|chr21 (23104417-23104614) | |
| 294-485, gnl|echTel1|scaffold_27219 (5519-5741) | |
| 294-485, gnl|fr1|chrUn (2168976-2169169) | |
| 294-485, gnl|hg17|chr2 (74085500-74085732) | |
| 294-485, gnl|Hg17|chr2 (74085500-74085691) | |
| 294-485, gnl|loxAfr1|scaffold_18695 (74381-74556) | |
| 294-485, gnl|mm7|chr6 (83515996-83515766) | |
| 294-485, gnl|Mm7|chr6 (83515994-83515803) | |
| 294-485, gnl|monDom2|scaffold_104 (4114714-4114512) | |
| 294-485, gnl|oryCun1|scaffold_199376 (134609-134841) | |
| 294-485, gnl|panTro1|chr12 (76490489-76490721) | |
| 294-485, gnl|rheMac2|chr13 (74164962-74165194) | |
| 294-485, gnl|rn3|chr4 (117953286-117953056) | |
| 294-485, gnl|tetNig1|chr12 (6730684-6730866) | |
| 294-485, gnl|xenTro1|scaffold_434 (367673-367488) | |
| 628-747, gnl|bosTau2|chr11 (9382750-9382869) | |
| 628-747, gnl|Hg17|chr2 (74095904-74096023) | |
| 628-747, gnl|Mm7|chr6 (83506836-83506717) | |
| 992-1212, gnl|bosTau2|chr11 (9384002-9384225) | |
| 992-1212, gnl|canFam2|chr38 (10805901-10806067) | |
| 992-1212, gnl|dasNov1|scaffold_228593 (1286-1416) | |
| 992-1212, gnl|hg17|chr1 (187572989-187573161) | |
| 992-1212, gnl|Hg17|chr2 (74097506-74097731) | |
| 992-1212, gnl|loxAfr1|scaffold_135824 (3268-3443) | |
| 992-1212, gnl|mm7|chr1 (145974785-145974875) | |
| 992-1212, gnl|Mm7|chr6 (83505793-83505598) | |
| 992-1212, gnl|oryCun1|scaffold_173912 (31585-31472) | |
| 992-1212, gnl|panTro1|chr1 (170122330-170122502) | |
| 992-1212, gnl|rheMac2|chr1 (179742575-179742403) | |
| 992-1212, gnl|rn3|chr13 (60108204-60108284) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-168, gnl|bosTau2|chr11 (9349963-9350130) | |
| 1-168, gnl|canFam2|chr17 (52208455-52207983) | |
| 1-168, gnl|dasNov1|scaffold_86565 (7233-7691) | |
| 1-168, gnl|echTel1|scaffold_314690 (81466-81995) | |
| 1-168, gnl|hg17|chr2 (74065594-74066118) | |
| 1-168, gnl|Hg17|chr2 (74065654-74065821) | |
| 1-168, gnl|mm7|chr6 (83532367-83531828) | |
| 1-168, gnl|Mm7|chr6 (83532313-83532146) | |
| 1-168, gnl|oryCun1|scaffold_199376 (108996-109533) | |
| 1-168, gnl|panTro1|chr12 (76470556-76471080) | |
| 1-168, gnl|rheMac2|chr13 (74143134-74143655) | |
| 1-168, gnl|rn3|chr4 (117969902-117969365) | |
| 294-485, gnl|bosTau2|chr11 (9373269-9373460) | |
| 294-485, gnl|canFam2|chr17 (52185793-52185561) | |
| 294-485, gnl|danRer3|chr21 (23104417-23104614) | |
| 294-485, gnl|echTel1|scaffold_27219 (5519-5741) | |
| 294-485, gnl|fr1|chrUn (2168976-2169169) | |
| 294-485, gnl|hg17|chr2 (74085500-74085732) | |
| 294-485, gnl|Hg17|chr2 (74085500-74085691) | |
| 294-485, gnl|loxAfr1|scaffold_18695 (74381-74556) | |
| 294-485, gnl|mm7|chr6 (83515996-83515766) | |
| 294-485, gnl|Mm7|chr6 (83515994-83515803) | |
| 294-485, gnl|monDom2|scaffold_104 (4114714-4114512) | |
| 294-485, gnl|oryCun1|scaffold_199376 (134609-134841) | |
| 294-485, gnl|panTro1|chr12 (76490489-76490721) | |
| 294-485, gnl|rheMac2|chr13 (74164962-74165194) | |
| 294-485, gnl|rn3|chr4 (117953286-117953056) | |
| 294-485, gnl|tetNig1|chr12 (6730684-6730866) | |
| 294-485, gnl|xenTro1|scaffold_434 (367673-367488) | |
| 628-747, gnl|bosTau2|chr11 (9382750-9382869) | |
| 628-747, gnl|Hg17|chr2 (74095904-74096023) | |
| 628-747, gnl|Mm7|chr6 (83506836-83506717) | |
| 992-1212, gnl|bosTau2|chr11 (9384002-9384225) | |
| 992-1212, gnl|canFam2|chr38 (10805901-10806067) | |
| 992-1212, gnl|dasNov1|scaffold_228593 (1286-1416) | |
| 992-1212, gnl|hg17|chr1 (187572989-187573161) | |
| 992-1212, gnl|Hg17|chr2 (74097506-74097731) | |
| 992-1212, gnl|loxAfr1|scaffold_135824 (3268-3443) | |
| 992-1212, gnl|mm7|chr1 (145974785-145974875) | |
| 992-1212, gnl|Mm7|chr6 (83505793-83505598) | |
| 992-1212, gnl|oryCun1|scaffold_173912 (31585-31472) | |
| 992-1212, gnl|panTro1|chr1 (170122330-170122502) | |
| 992-1212, gnl|rheMac2|chr1 (179742575-179742403) | |
| 992-1212, gnl|rn3|chr13 (60108204-60108284) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| mas (0.210305) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |