Ss1.1-Pig4-TMW8008A09.5
|
CATCTCTCTACCTCCACCCCGTGTCTCCTCCTGTCCTGGCCCTTTCATCTGCTCCACCAA
GGGGCTCTTGGATCCCTTCTTGAGGCCCCAGGTAACCGCAGTCACAGCTCTCTAGGACAG
AAGCCCAGGGGCCAGGGCAGCAGGGGGCTAGCCCATCGTATCCCAGCCCAGCCAAGTCTG
CCGTGTGAGGTTGTTCAGGATGTGCACTGCACAAGGGCACTGCCTGCGGGGATCCCAGTT
CACACACCCCGTAGACGTGGCCAATCTGTATATTTATGATGACGATTTTCTTTTTGGTAG
ATGGAGATAAAATGTCTTGAGAAAAGGCATCCTTTTCCTAATTGACACAAAGCCTCCACA
AAGTCAGAGGGACTGGCTGTGCCTCTGACCAAGCCCACGGCTTGGAGTGGTCAGAGAGGA
GTGAGCCCTTAGTGAGAAGCGGGGAGGTGACACTTGTCCACGTGGGCTCCACTTCCCCAA
GTCCTCAGCTCACACAGTCTCCCTTGCAGGCAGGTGTGAAAAACCCGAGAGGCAGCCTCT
GCTCCGCCCCCCTGCACACGCCCCTCATCCTAGATCCTTTTGCTTCCATCTCTGGTGGCT
CCTCCCAGGAAACCAGCGCTAGGGCTGGGAGTGGGGGAGAAAAGGGAGGAGATGCCCAGG
GCCCCCTAGGGGTAGGGCCTGAGCTCCCACCCGCTACTGCACTTTCCCCCCCCCTTCTCC
CCCAACTCTGCTTCCTTCAGTTTGTAAAGTTGGTGATTATATTTTTGGGGGCTTTCCTTT
TATTTTTTAAATGTAAAATTTATTTATATTCCGTATTTAAAGTTGTAAAAAAAAATAACC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATCTCTCTACCTCCACCCCGTGTCTCCTCCTGTCCTGGCCCTTTCATCTGCTCCACCAA
GGGGCTCTTGGATCCCTTCTTGAGGCCCCAGGTAACCGCAGTCACAGCTCTCTAGGACAG
AAGCCCAGGGGCCAGGGCAGCAGGGGGCTAGCCCATCGTATCCCAGCCCAGCCAAGTCTG
CCGTGTGAGGTTGTTCAGGATGTGCACTGCACAAGGGCACTGCCTGCGGGGATCCCAGTT
CACACACCCCGTAGACGTGGCCAATCTGTATATTTATGATGACGATTTTCTTTTTGGTAG
ATGGAGATAAAATGTCTTGAGAAAAGGCATCCTTTTCCTAATTGACACAAAGCCTCCACA
AAGTCAGAGGGACTGGCTGTGCCTCTGACCAAGCCCACGGCTTGGAGTGGTCAGAGAGGA
GTGAGCCCTTAGTGAGAAGCGGGGAGGTGACACTTGTCCACGTGGGCTCCACTTCCCCAA
GTCCTCAGCTCACACAGTCTCCCTTGCAGGCAGGTGTGAAAAACCCGAGAGGCAGCCTCT
GCTCCGCCCCCCTGCACACGCCCCTCATCCTAGATCCTTTTGCTTCCATCTCTGGTGGCT
CCTCCCAGGAAACCAGCGCTAGGGCTGGGAGTGGGGGAGAAAAGGGAGGAGATGCCCAGG
GCCCCCTAGGGGTAGGGCCTGAGCTCCCACCCGCTACTGCACTTTCCCCCCCCCTTCTCC
CCCAACTCTGCTTCCTTCAGTTTGTAAAGTTGGTGATTATATTTTTGGGGGCTTTCCTTT
TATTTTTTAAATGTAAAATTTATTTATATTCCGTATTTAAAGTTGTAAAAAAAAATAACC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
591-778, CR550549 Normalized and Subtracted bovine embryonic and
(emb|CR550549.2|), blast E-value=0.00000000002, identity=93.22% |
|
591-778, BovGen_03704 normal cattle brain Bos taurus cDNA clone
(gb|CO875379.1|), blast E-value=0.000000000000001, identity=94.83% |
|
591-778, 1358797 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN530933.1|),
blast E-value=0.000000000000001, identity=94.83% |
|
591-778, 1360333 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN532307.1|),
blast E-value=0.00000000002, identity=93.22% |
|
591-778, HW_Loin_1_C10 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV791846.1|), blast E-value=0.000000000000001, identity=94.83% |
|
591-778, Hw_loin_17_050628_G02 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV798656.1|), blast E-value=0.000000000000001, identity=94.83% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
591-778, CR550549 Normalized and Subtracted bovine embryonic and
(emb|CR550549.2|), blast E-value=0.00000000002, identity=93.22% |
|
591-778, BovGen_03704 normal cattle brain Bos taurus cDNA clone
(gb|CO875379.1|), blast E-value=0.000000000000001, identity=94.83% |
|
591-778, 1358797 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN530933.1|),
blast E-value=0.000000000000001, identity=94.83% |
|
591-778, 1360333 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN532307.1|),
blast E-value=0.00000000002, identity=93.22% |
|
591-778, HW_Loin_1_C10 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV791846.1|), blast E-value=0.000000000000001, identity=94.83% |
|
591-778, Hw_loin_17_050628_G02 Bos taurus CF-24-HW loin cDNA library Bos
(gb|DV798656.1|), blast E-value=0.000000000000001, identity=94.83% |
|
1-289, gnl|bosTau2|chr5 (69644408-69644130) |
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1-289, gnl|canFam2|chr10 (28885616-28885188) |
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1-289, gnl|dasNov1|scaffold_30294 (5338-5752) |
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1-289, gnl|hg17|chr22 (37944623-37945048) |
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1-289, gnl|Hg17|chr22 (37945058-37944774) |
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1-289, gnl|loxAfr1|scaffold_7083 (33451-33876) |
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1-289, gnl|mm7|chr15 (80080386-80080770) |
|
1-289, gnl|Mm7|chr15 (80080780-80080528) |
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1-289, gnl|oryCun1|scaffold_125307 (9912-10299) |
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1-289, gnl|panTro1|chr23 (38182412-38182837) |
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1-289, gnl|rheMac2|chr10 (83127815-83128240) |
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1-289, gnl|rn3|chr7 (118278166-118278553) |
| |
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325-838, gnl|bosTau2|chr5 (69644118-69643584) |
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325-838, gnl|Hg17|chr22 (37944762-37944210) |
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325-838, gnl|Mm7|chr15 (80080516-80080021) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-289, gnl|bosTau2|chr5 (69644408-69644130) |
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1-289, gnl|canFam2|chr10 (28885616-28885188) |
|
1-289, gnl|dasNov1|scaffold_30294 (5338-5752) |
|
1-289, gnl|hg17|chr22 (37944623-37945048) |
|
1-289, gnl|Hg17|chr22 (37945058-37944774) |
|
1-289, gnl|loxAfr1|scaffold_7083 (33451-33876) |
|
1-289, gnl|mm7|chr15 (80080386-80080770) |
|
1-289, gnl|Mm7|chr15 (80080780-80080528) |
|
1-289, gnl|oryCun1|scaffold_125307 (9912-10299) |
|
1-289, gnl|panTro1|chr23 (38182412-38182837) |
|
1-289, gnl|rheMac2|chr10 (83127815-83128240) |
|
1-289, gnl|rn3|chr7 (118278166-118278553) |
| |
|
325-838, gnl|bosTau2|chr5 (69644118-69643584) |
|
325-838, gnl|Hg17|chr22 (37944762-37944210) |
|
325-838, gnl|Mm7|chr15 (80080516-80080021) |
|
cga (0.279096) |
|
nms (0.213858) |
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fbs (0.175346) |
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fhi (0.169578) |
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csp (0.161186) |
|
pty (0.142714) |
|
pla (0.133672) |
|
cly (0.120642) |
|
cty (0.10408) |
|
cga (0.279096) |
|
nms (0.213858) |
|
fbs (0.175346) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
pty (0.142714) |
|
pla (0.133672) |
|
cly (0.120642) |
|
cty (0.10408) |
