Non-Coding RNA Search

Ss1.1-Pig4-TMW8008C06.5

Sequence:


               
               CTCAGAATTCTGCGCCTTTCCCGAGTAAAATGGCCCAGCTCGCAGCTATTTGCAAAATGC
AGTTAGAAGAGCAATCAAGTGAACCCAGAAAAAAAGTGAAAGTCCAACTGGCAAGATCTG
GGCACTGCAAGCCCGTGGCCTCTCTGGACACTCCAGCAAATGCTGAGCTGGAGATGACGG
CGCCGTCCCTCATCCAGCCTCTGGGGGTGCTCCCCCTCATCCCCAGCCCATTGTCATCGG
CAGTGCCCGTGATCCTACCTCAGGCCCCTTCGGGCCCATCCTATGCCATCTACTTGCAGC
CTGCCCAAGCCCAAAGCGTGACGTCGCCCCAAGGCCCGAGACCCTCAGTCTGCCCCACCC
CTTCTAAAGCTGCAGGATCAAAAGACTCCACCGATGCCACCACTGAGAATGCAGCCATTG
ATGCGACCAAGTGCAGTGCCTCTACCAGGCCGGAGAGACAAGGGCCAAAGAACCGAGATA
GGGAGCCTGCTGGAGAAAGGGGCTCAAAGAGAGCAAGCCTGCTCGAGGACGGTGGTTCCA
AAAAGAAATTTAAAGAAGACCTGAAAGGACTTGAAAATGTCTCCGCAACCTTGTTCCCAT
CAGGATACCTAATCCCTCTCACCCAGTGCTCAACCCTGGGGGCAGAATCCATTTTGTCTA
GTAAAGAAAACTCAAGTACACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGAATTCTGCGCCTTTCCCGAGTAAAATGGCCCAGCTCGCAGCTATTTGCAAAATGC
AGTTAGAAGAGCAATCAAGTGAACCCAGAAAAAAAGTGAAAGTCCAACTGGCAAGATCTG
GGCACTGCAAGCCCGTGGCCTCTCTGGACACTCCAGCAAATGCTGAGCTGGAGATGACGG
CGCCGTCCCTCATCCAGCCTCTGGGGGTGCTCCCCCTCATCCCCAGCCCATTGTCATCGG
CAGTGCCCGTGATCCTACCTCAGGCCCCTTCGGGCCCATCCTATGCCATCTACTTGCAGC
CTGCCCAAGCCCAAAGCGTGACGTCGCCCCAAGGCCCGAGACCCTCAGTCTGCCCCACCC
CTTCTAAAGCTGCAGGATCAAAAGACTCCACCGATGCCACCACTGAGAATGCAGCCATTG
ATGCGACCAAGTGCAGTGCCTCTACCAGGCCGGAGAGACAAGGGCCAAAGAACCGAGATA
GGGAGCCTGCTGGAGAAAGGGGCTCAAAGAGAGCAAGCCTGCTCGAGGACGGTGGTTCCA
AAAAGAAATTTAAAGAAGACCTGAAAGGACTTGAAAATGTCTCCGCAACCTTGTTCCCAT
CAGGATACCTAATCCCTCTCACCCAGTGCTCAACCCTGGGGGCAGAATCCATTTTGTCTA
GTAAAGAAAACTCAAGTACACTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20380074|gb|AAH28244.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20380074|gb|AAH28244.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-276, - strand, RNAz p=0.873545

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, - strand, RNAz p=0.873545

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-451, gnl|bosTau2|chr29 (19377882-19378258)
               

               
               78-451, gnl|Hg17|chr11 (19208113-19207734)
               

               
               78-451, gnl|Mm7|chr7 (45091883-45091525)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-451, gnl|bosTau2|chr29 (19377882-19378258)
               

               
               78-451, gnl|Hg17|chr11 (19208113-19207734)
               

               
               78-451, gnl|Mm7|chr7 (45091883-45091525)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	78-451, gnl\|bosTau2\|chr29 (19377882-19378258)
	78-451, gnl\|Hg17\|chr11 (19208113-19207734)
	78-451, gnl\|Mm7\|chr7 (45091883-45091525)