Non-Coding RNA Search

Ss1.1-Pig4-TMW8008D02.5

Sequence:


               
               GAAAGGACTGCAAGGCGGCCGGCTGTGGCCAGAGAGCACAGGATGATCCAGCAATGGAAG
AGAAAATACTGCAAACTGACTGGTTGCTCGTGAACATGATGGTTTATTTTTGTGACAGGC
ATCTGTGGGATCTGTAATAGAAATGATGGCTGGCTGTGGTGAAATTGATCACTCAATAAA
CATGCTTCCTACCAACAGGAAAGCAAACGAGTCCTGTTCTAATACTGCACCTTCTCTAAC
GGTCCCTGAATGTGCCATTTGTCTGCAAACATGTGTTCACCCAGTCAGTCTACCCTGTAA
GCATGTCTTCTGCTATCTGTGTGTGAAGGGAGCTTCATGGCTTGGAAAACGATGTGCCCT
CTGCCGACAAGAAATTCCTGAGGATTTCCTTGATAAGCCAACCTTATTGTCACCAGAAGA
ACTCAAGGCAGCAAGTAGAGGAAATGGTGAATATGCATGGTATTATGAAGGAAGAAATGG
GTGGTGGCAGTATGATGAGCGTACTAGTAGAGAGCTGGAAGATGCTTTTTCCAAAGGTAA
AAAGAGCACTGAAATGTTAATTGCCGGGTTTCTGTATGTTGCTGATCTTGAAAATATGGT
TCAATATAGGAGAAATGAACATGGACGTCGCAGGAAGATTAAGCGGGATATAATAGACAT
ACCAAAGAAGGGAGTCGCTGGACTTAGGCTGGACTGTGATGCTAATACGGTAAACCTAGC
AAGAGAGAGCTCTGCTGATGGAGCGGACAGTGTATCAGCACAGAGTGGAGCTTCTGTTCA
GCCTCTAGTGTCATCTTCTGTCAGGCCCCTGACGTCAGTAGATGGTCAGTTAACAAGCCC
TGCAACACCATCCCCTGATGCAAGCACTTCTCTAGAAGACTCTTTTGCTCATTTACAACT
CACTGGAGACAGCACAGCTGAAAGGAGTCATAGGGGGGAAGGAGAAGAAGATCACGAATC
ACCATCTTCAGGCAGGGTACCAGCACCAGACACTTCCATTGAAGAAACCGAATCAGATGC
CAGTAGTGATAATGAGGATGTATCTGCGCCTGTTGCACAACACGCCTTGACCCAACAGAG
ACTTTTGGTTCCTAATGCAAACCAGACAGTATCTGATCGATCTGATAGATCAGGAACTGA
TCGATCCATAGCAGGGGGTGGAACAGTGAGTGTCAGTGTCAGATCTAGAAGGCCTGATGG
ACAGTGCACAGTAACCGAAGTTTAAATTTTAAGTTTTCAGATCCACACTCAAGGTAAAAA
TGATTATCTGTAAATTTCTGCCCACGTAACATTATACTCATCCCTAGTAGTGCATTTTGG
GAGTTGGGGTGGGAAGGGGTGTGGGAAGGATAGACCTGTAATTAAAATGTCTAACATGTC
TCTGTTGAGAAATTTATTTAATATAAGGAACTTGGGTGTTAATAGTTGAGAGCTGTTTAG
TAATAACCCAGTTTTCTTGAGGTCTGTTTATTTTTTAGTTTTTTAAAATATCTTCGTTCT
TTTGGCCAGCGTGTGTATATTATCTGTGCATTAACAGTCCTCATCTGACTCGTGCATTGT
GTCGTATTTTTCTGCATGGACTGACATAAGACCATTACTAAAATTTGGCACTATGAGATG
TCTGATATCAGTATGAACAGGAAAGCTTAATTAATGTGAGAATAGATGTGAACTTGGGAT
TTTTAAAATAGATGAATAACAACTATGTAATAGTAAAGTTACTGAAATGGAAATGTAAAG
AACACAGCTTATAATTTATGTTTCGGAATCTTGTCTGTAACACACTTCATGGCGTTCCCA
TAGGCTTTGCTGTCTAGTCCTTGTAGTTTGAGGTTTCTTTTGATCCACATTTTTTTTTGA
TTACAGACTTTATAATTTAATAAATACTAGAGTTTATCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGACTGCAAGGCGGCCGGCTGTGGCCAGAGAGCACAGGATGATCCAGCAATGGAAG
AGAAAATACTGCAAACTGACTGGTTGCTCGTGAACATGATGGTTTATTTTTGTGACAGGC
ATCTGTGGGATCTGTAATAGAAATGATGGCTGGCTGTGGTGAAATTGATCACTCAATAAA
CATGCTTCCTACCAACAGGAAAGCAAACGAGTCCTGTTCTAATACTGCACCTTCTCTAAC
GGTCCCTGAATGTGCCATTTGTCTGCAAACATGTGTTCACCCAGTCAGTCTACCCTGTAA
GCATGTCTTCTGCTATCTGTGTGTGAAGGGAGCTTCATGGCTTGGAAAACGATGTGCCCT
CTGCCGACAAGAAATTCCTGAGGATTTCCTTGATAAGCCAACCTTATTGTCACCAGAAGA
ACTCAAGGCAGCAAGTAGAGGAAATGGTGAATATGCATGGTATTATGAAGGAAGAAATGG
GTGGTGGCAGTATGATGAGCGTACTAGTAGAGAGCTGGAAGATGCTTTTTCCAAAGGTAA
AAAGAGCACTGAAATGTTAATTGCCGGGTTTCTGTATGTTGCTGATCTTGAAAATATGGT
TCAATATAGGAGAAATGAACATGGACGTCGCAGGAAGATTAAGCGGGATATAATAGACAT
ACCAAAGAAGGGAGTCGCTGGACTTAGGCTGGACTGTGATGCTAATACGGTAAACCTAGC
AAGAGAGAGCTCTGCTGATGGAGCGGACAGTGTATCAGCACAGAGTGGAGCTTCTGTTCA
GCCTCTAGTGTCATCTTCTGTCAGGCCCCTGACGTCAGTAGATGGTCAGTTAACAAGCCC
TGCAACACCATCCCCTGATGCAAGCACTTCTCTAGAAGACTCTTTTGCTCATTTACAACT
CACTGGAGACAGCACAGCTGAAAGGAGTCATAGGGGGGAAGGAGAAGAAGATCACGAATC
ACCATCTTCAGGCAGGGTACCAGCACCAGACACTTCCATTGAAGAAACCGAATCAGATGC
CAGTAGTGATAATGAGGATGTATCTGCGCCTGTTGCACAACACGCCTTGACCCAACAGAG
ACTTTTGGTTCCTAATGCAAACCAGACAGTATCTGATCGATCTGATAGATCAGGAACTGA
TCGATCCATAGCAGGGGGTGGAACAGTGAGTGTCAGTGTCAGATCTAGAAGGCCTGATGG
ACAGTGCACAGTAACCGAAGTTTAAATTTTAAGTTTTCAGATCCACACTCAAGGTAAAAA
TGATTATCTGTAAATTTCTGCCCACGTAACATTATACTCATCCCTAGTAGTGCATTTTGG
GAGTTGGGGTGGGAAGGGGTGTGGGAAGGATAGACCTGTAATTAAAATGTCTAACATGTC
TCTGTTGAGAAATTTATTTAATATAAGGAACTTGGGTGTTAATAGTTGAGAGCTGTTTAG
TAATAACCCAGTTTTCTTGAGGTCTGTTTATTTTTTAGTTTTTTAAAATATCTTCGTTCT
TTTGGCCAGCGTGTGTATATTATCTGTGCATTAACAGTCCTCATCTGACTCGTGCATTGT
GTCGTATTTTTCTGCATGGACTGACATAAGACCATTACTAAAATTTGGCACTATGAGATG
TCTGATATCAGTATGAACAGGAAAGCTTAATTAATGTGAGAATAGATGTGAACTTGGGAT
TTTTAAAATAGATGAATAACAACTATGTAATAGTAAAGTTACTGAAATGGAAATGTAAAG
AACACAGCTTATAATTTATGTTTCGGAATCTTGTCTGTAACACACTTCATGGCGTTCCCA
TAGGCTTTGCTGTCTAGTCCTTGTAGTTTGAGGTTTCTTTTGATCCACATTTTTTTTTGA
TTACAGACTTTATAATTTAATAAATACTAGAGTTTATCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6DV09_GECJA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6DV09_GECJA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               304-423, - strand, RNAz p=0.600585
               

               
               664-903, - strand, RNAz p=0.976821
               

               
               1024-1122, + strand, RNAz p=0.948795

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-423, - strand, RNAz p=0.600585
               

               
               664-903, - strand, RNAz p=0.976821
               

               
               1024-1122, + strand, RNAz p=0.948795

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               145-1122, gnl|bosTau2|chr9 (10599706-10598738)
               

               
               145-1122, gnl|Hg17|chr6 (127649454-127650452)
               

               
               145-1122, gnl|Mm7|chr10 (29128561-29127566)
               


               
               1131-1920, gnl|bosTau2|chr9 (10601798-10602572)
               

               
               1131-1920, gnl|Hg17|chr6 (127650413-127651200)
               

               
               1131-1920, gnl|Mm7|chr10 (29127605-29126846)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-1122, gnl|bosTau2|chr9 (10599706-10598738)
               

               
               145-1122, gnl|Hg17|chr6 (127649454-127650452)
               

               
               145-1122, gnl|Mm7|chr10 (29128561-29127566)
               


               
               1131-1920, gnl|bosTau2|chr9 (10601798-10602572)
               

               
               1131-1920, gnl|Hg17|chr6 (127650413-127651200)
               

               
               1131-1920, gnl|Mm7|chr10 (29127605-29126846)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

Help | Less info


               
               vin (1.33023)
               

               
               isp (1.20301)
               

               
               mgp (0.692042)
               

               
               tes (0.623441)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (1.33023)
               

               
               isp (1.20301)
               

               
               mgp (0.692042)
               

               
               tes (0.623441)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               fcc (0.39557)
               

               
               mcp (0.341297)
               

               
               spc (0.340097)
               

               
               mga (0.32041)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	304-423, - strand, RNAz p=0.600585
	664-903, - strand, RNAz p=0.976821
	1024-1122, + strand, RNAz p=0.948795

	145-1122, gnl\|bosTau2\|chr9 (10599706-10598738)
	145-1122, gnl\|Hg17\|chr6 (127649454-127650452)
	145-1122, gnl\|Mm7\|chr10 (29128561-29127566)

	1131-1920, gnl\|bosTau2\|chr9 (10601798-10602572)
	1131-1920, gnl\|Hg17\|chr6 (127650413-127651200)
	1131-1920, gnl\|Mm7\|chr10 (29127605-29126846)

	vin (1.33023)
	isp (1.20301)
	mgp (0.692042)
	tes (0.623441)
	liv (0.438853)
	lin (0.436808)
	hea (0.408998)
	fcc (0.39557)
	mcp (0.341297)
	spc (0.340097)
	mga (0.32041)
	bfe (0.299715)
	fat (0.294855)
	ret (0.257467)
	thg (0.253582)
	jca (0.22792)
	nms (0.213858)
	cty (0.20816)
	sag (0.182715)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	rec (0.17307)
	nco (0.161734)
	fco (0.157208)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)